hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11340932/chunk_1/iprscan-20080502-11340932.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0735 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01299 synapt_SV2: synaptic vesicle protein SV2 1107.2 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01299 1/1 1 707 [] 1 742 [] 1107.2 0 Alignments of top-scoring domains: TIGR01299: domain 1 of 1, from 1 to 707: score 1107.2, E = 0 *->ledgfkdraallkGakdiakevkkhaakkvnkgldraqdeytrrsys + l a+dia+ +++ n+g+d + KIAA0735 1 ------NSPNLYHRARDIAQGATRQSQ---NQGMDDYK--------- 29 rfededddddfppPgdgyyrGegnddeeeGggssdateGhdeddeiyeGe +d+ ++P+dgyyrG ++ e ++ sd teGhde+deiyeGe KIAA0735 30 ----YQDNYGGYAPSDGYYRGNESNP--EEDAQSDVTEGHDEEDEIYEGE 73 yqGiPraengGkgervadGaPlgGvrgglkdgeGPPGGegeaerrkdeee yqGiP + k + + + l+ ++ aer dee+ KIAA0735 74 YQGIP-HPDDVKAKQAKMAPSRM---DSLRGQT-----DLMAERLEDEEQ 114 laqqyelilrecGhGrfqWalffvlGlalladGvevfvvGfvlPsaekdl la qye+i+ ecGhGrfqW lffvlGlal+adGvevfvv f lPsaekd+ KIAA0735 115 LAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDM 164 clpdsgkGwlGlivylGllvGaflWGGladklGrkqclliclsvngffaf cl++s kG+lG+ivylG++ Gaf+ GGladklGrk+ l ++l+vn+ fa KIAA0735 165 CLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFAS 214 lssfvqGyGffllcrllsGfGiGGaiPtvfsyfaeflarekrGehlsWlc lssfvqGyG fl+crl+sG+GiGGa+P+vf+yf+efl+rekrGehlsWl KIAA0735 215 LSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLG 264 lfWliGGvyaaalaWaiiPhyGWsfslGsayqfhsWrvfvlvcalPcvfa +fW+ GG+ya+a+aW+iiPhyGW fs+G+ y fhsWrvfv+vcalPc + KIAA0735 265 IFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPCTVS 314 vgaltfqPesPrfllenGkhdeaWlvlklvhdtnlrakGhPekvftvnhi ++al f+PesPrflle GkhdeaW++lk+vhdtn+rakG Pekvftv++i KIAA0735 315 MVALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPEKVFTVSNI 364 ktphqedelieiesdtGtWyrrwgvraltlgggvWgnflrcfnppyrent ktp+q de iei+s tGtWy+rw vr +t+ +vW n l c pyr nt KIAA0735 365 KTPKQMDEFIEIQSSTGTWYQRWLVRFKTIFKQVWDNALYCVMGPYRMNT 414 lkltgvWftlsfgyyGltvWfPdvikhlqaddyalltknfpgdkyenftf l l +vWf ++f+yyGltvWfPd+i++ q ++y + k+f g+ + t+ KIAA0735 415 LILAVVWFAMAFSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVYGATI 464 nftlenqvhtGgeydngkflGlklksvtfedslfeecyfddvtssntffk nft+enq+h+ g+ n+kf + +k v fed+ f+ecyf+dvts++t+fk KIAA0735 465 NFTMENQIHQHGKLVNDKFTRMYFKHVLFEDTFFDECYFEDVTSTDTYFK 514 nctfidtlfyntdlfpykfvdselvnctflhnkeGcpldfdGdgygaywv nct+ +t+fyntdl+++kf++ +++n+tfl keGc +d++ ++ +++ KIAA0735 515 NCTIESTIFYNTDLYEHKFINCRFINSTFLEQKEGCHMDLE--QDNDFLI 562 yfvnflGtlavlPGnivsallldkiGrltllgGssvlsgvscfflwfGns y+v+flG+l+vlPGni+sall+d+iGrl+++gGs+++s+v cffl fGns KIAA0735 563 YLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLISAVCCFFLFFGNS 612 esaligllclfgGltiaaWnaldvltvelyPtdkratgfGflnalcklaa esa+ig clf G +iaaWnaldv+tvelyPt++rat+fG+ln lck a KIAA0735 613 ESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGA 662 vlGnlifgslvgitkaaPillasaalalGgllglklPdtrgqvlq<-* +lGn if s+vgitk +Pilla+a l+ Ggl++l+lP+tr qvl+ KIAA0735 663 ILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPETREQVLM 707 //