# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk03869.fasta.huge -Q ../query/KIAA0737.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0737, 629 aa vs ./tmplib.23663 library 1986876 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.9304+/-0.00856; mu= -17.0689+/- 0.574 mean_var=521.8804+/-126.082, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.056142 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0808 ( 530 res) hk04477s1 ( 530) 928 89.7 6.9e-19 >>KIAA0808 ( 530 res) hk04477s1 (530 aa) initn: 1060 init1: 748 opt: 928 Z-score: 430.9 bits: 89.7 E(): 6.9e-19 Smith-Waterman score: 991; 36.349% identity (59.211% similar) in 608 aa overlap (6-602:36-518) 10 20 30 KIAA07 DGGSGCVKMEFPGGNDNYLTITGPSHPFLSGAETF : :.. :.. :...: ::. .. ..... KIAA08 DVRFYPPPAQPAAAPDAPCLGPSPCLDPYYCNKFD---GENMYMSMTEPSQDYVPASQSY 10 20 30 40 50 60 40 50 60 70 80 90 KIAA07 HTPSLGDEEFEIPPISLDSDP--SLA-VSDVVGHFDDLADPSSSQDGSFSAQYGVQTLDM ::: .:.:.::::. : : ::. ...: . . .: : . ..: . . :..:. KIAA08 PGPSLESEDFNIPPITPPSLPDHSLVHLNEVESGYHSLCHPMN-HNGLL--PFHPQNMDL 70 80 90 100 110 100 110 120 130 140 KIAA07 PVGMTHGLMEQGGGLLSGGLTM--DLDHSIGTQYSANPPVTIDVPM---TDMTS--GLMG : . ... : : :::..... :. . :::::..: .. : .:. . :.: KIAA08 PEITVSNMLGQDGTLLSNSISVMPDIRNPEGTQYSSHPQMAAMRPRGQPADIRQQPGMMP 120 130 140 150 160 170 150 160 170 180 190 200 KIAA07 HSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPTSSLHEDGVEDFRRQLPS :.:::::.::.::.::::..::... . :: :.::::.::.::: .: . . KIAA08 HGQLTTINQSQLSAQLGLNMGGSNVPHNSPSPPGSKSATPSPSSSVHEDEGDDTSKINGG 180 190 200 210 220 230 210 220 230 240 250 260 KIAA07 QKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIV .: . . ::: :.:::.:::::::::::::::::::::::::::::::::::::::::: KIAA08 EKRPASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIV 240 250 260 270 280 290 270 280 290 300 310 320 KIAA07 ASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPSPP :::::.::::::::::.::::::::::: ::::. . .. : :.. .: .:: KIAA08 ASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYSEPVDV------KTSQPP 300 310 320 330 340 350 330 340 350 360 370 380 KIAA07 PMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAGGQPNITKLIITKQMLPS . . :. .. :. . : . :::. .: : .:..: : :: KIAA08 QLI-----NSKPSVFHGPSQAHSALY---LSSHYHQQ----PGMNPHLTA------MHPS 360 370 380 390 390 400 410 420 430 440 KIAA07 SITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQIVTRSVLQAAAAAAAAASMQ .: ... .:..: :: :. :.: KIAA08 ------------LPRNIAP--------------KPNNQMP-VTVSI----------ANMA 400 410 450 460 470 480 490 500 KIAA07 LPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPPQKVRINLQQQPPPLQIKS-V . : ::::: .:: .:... .:: :: .:::: ... :.:..: . KIAA08 VSP----PPPLQI--SPPLHQHLN-MQQHQPL-TMQQPLGNQL---------PMQVQSAL 420 430 440 450 460 510 520 530 540 550 560 KIAA07 PLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPSPETICEMITDVVPEVESPSQMDV ::... :: .:. .:. :. : ...:... : KIAA08 HSPTMQQGFTL---------------QPDYQTIINPTS-TAAQVVTQAMEYV-------- 470 480 490 570 580 590 600 610 620 KIAA07 ELVSGSPVALSPQPRCVRSGCENPPIVSKDWDNEYCSNECVVKHCRDVFLAWVASRNSNT ::::.::: ::.:.:::. KIAA08 -----------------RSGCRNPPPQPVDWNNDYCSSGGMQRDKALYLT 500 510 520 530 KIAA07 VVFVK 629 residues in 1 query sequences 1986876 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:05 2008 done: Thu Dec 18 15:14:05 2008 Total Scan time: 0.520 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]