hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11422523/chunk_1/iprscan-20080502-11422523.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0740 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00651.21.fs BTB/POZ domain 95.5 3.7e-26 3 PF00071.12.fs Ras family 83.3 1.4e-24 2 PF00651.21.ls BTB/POZ domain 70.6 4.7e-18 2 PF00071.12.ls Ras family 62.2 1.5e-15 1 PF08477.3.fs Miro-like protein 41.4 1.3e-11 2 PF08477.3.ls Miro-like protein 39.3 1.3e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00071.12.ls 1/1 16 209 .. 1 174 [] 62.2 1.5e-15 PF08477.3.ls 1/1 16 143 .. 1 139 [] 39.3 1.3e-08 PF08477.3.fs 2/2 80 143 .. 69 139 .] 32.0 6.8e-09 PF00071.12.fs 2/2 100 209 .. 72 174 .] 69.5 1.8e-20 PF00651.21.ls 1/2 260 457 .. 1 135 [] 6.8 0.00091 PF00651.21.fs 1/3 260 297 .. 1 49 [. 19.3 6.6e-05 PF00651.21.fs 2/3 411 457 .. 77 135 .] 14.3 0.0017 PF00651.21.fs 3/3 475 583 .. 1 135 [] 62.0 8.4e-17 PF00651.21.ls 2/2 475 583 .. 1 135 [] 63.7 5.4e-16 Alignments of top-scoring domains: PF00071.12.ls: domain 1 of 1, from 16 to 209: score 62.2, E = 1.5e-15 *->KlVlvGDgGVGKSsLliR......FtdnkFpeeYipTI.GvDFytkt K+V+vGD +VGK+ L + + +++ t+ + ++pT+ +D y+ KIAA0740 16 KCVVVGDNAVGKTRLICAracnttLTQYQLLATHVPTVwAIDQYRVC 62 vevd........gktvkLqIWDTAGQErFralrpaYYRgAqGfLLVYDIT ev +++++ + v L +WDT G + + r+ Y +++++L+++I KIAA0740 63 QEVLersrdvvdEVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIA 110 srdSFenvk.kWleeilrhadkdenvpivLVGNKcDLeddedlele.kq. ++ S+++vk+ W++ei+++++ +p++LVG DL+ ++ le +++ KIAA0740 111 NPNSLNHVKsMWYPEIKHFCP--R-TPVILVGCQLDLRYAD---LEaVNr 154 ...........kRqVsteeGealAkelgAlpFmETSAKtneNVeeaFeel +++ ++ ++ ++e G++ Akelg lp++ETS ++ +++++F+++ KIAA0740 155 arrplarpikrGDILPPEKGREVAKELG-LPYYETSVFDQFGIKDVFDNA 203 areilk<-* +r++l KIAA0740 204 IRAALI 209 PF08477.3.ls: domain 1 of 1, from 16 to 143: score 39.3, E = 1.3e-08 *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya k+vV+Gd vGK+ l+ a ++ + + L ++p+ + y KIAA0740 16 KCVVVGDNAVGKTRLICARACNTTL--TQYQLLATHVPTVWAIDQYR 60 vdtlevdgdtklenv.rlkefllilwDtggreelkfehepiAymktaDav v +++ +++ v + l lwDt g+ ++ +A +++D+v KIAA0740 61 V---CQEVLERSRDVvDEVSVSLRLWDTFGDHHKDRR---FA-YGRSDVV 103 llvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-* +l ++ +p+S+++v+s+ w+p+++ Pvilvg++lD KIAA0740 104 VLCFSIANPNSLNHVKSM--WYPEIKHFCPR-TPVILVGCQLD 143 PF08477.3.fs: domain 2 of 2, from 80 to 143: score 32.0, E = 6.8e-09 *->lilwDtggreelkfehepiAymktaDavllvyDlsdpeSfervssli l lwDt g+ ++ +A +++D+v+l ++ +p+S+++v+s+ KIAA0740 80 LRLWDTFGDHHKDRR---FA-YGRSDVVVLCFSIANPNSLNHVKSM- 121 kwlpnlrklgkkaiPvilvgnKlD<-* w+p+++ Pvilvg++lD KIAA0740 122 -WYPEIKHFCPR-TPVILVGCQLD 143 PF00071.12.fs: domain 2 of 2, from 100 to 209: score 69.5, E = 1.8e-20 *->AqGfLLVYDITsrdSFenvk.kWleeilrhadkdenvpivLVGNKcD +++++L+++I ++ S+++vk+ W++ei+++++ +p++LVG D KIAA0740 100 SDVVVLCFSIANPNSLNHVKsMWYPEIKHFCP--R-TPVILVGCQLD 143 Leddedlele.kq............kRqVsteeGealAkelgAlpFmETS L+ ++ le +++ +++ ++ ++ ++e G++ Akelg lp++ETS KIAA0740 144 LRYAD---LEaVNrarrplarpikrGDILPPEKGREVAKELG-LPYYETS 189 AKtneNVeeaFeelareilk<-* ++ +++++F++++r++l KIAA0740 190 VFDQFGIKDVFDNAIRAALI 209 PF00651.21.ls: domain 1 of 2, from 260 to 457: score 6.8, E = 0.00091 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l++ ++ DV + +d ++++AH+ +La +S+ F++l KIAA0740 260 LDNPLCA----DVLFILQD-------QEHIFAHRIYLATSSSKFYDL 295 Ftgqfkes.......................................... F+ +es++++++ ++++++++ +++ + ++++++++++++ ++ ++ KIAA0740 296 FLMECEESpngsegacekekqsrdfqgrilsvdpeeereegppripqadq 345 ..............................................itee ++++++ + + + ++ +++++ ++ +++ + +++ + ++ + + KIAA0740 346 wkssnkslvealgleaegavpetqtltgwskgfigmhremqvnpisKRMG 395 essvsseieledvspedfealLefiYtgelsitqdqksPssckseenved ++v+ + + v+p f+ lL+f+Ytg l+ + e++++ KIAA0740 396 PMTVV-RMD-ASVQPGPFRTLLQFLYTGQLDEK-----------EKDLVG 432 lLaaAadllqipslvdaCeefliksl<-* l ++A + l++ +l+ ++e+ + k KIAA0740 433 LAQIA-EVLEMFDLRMMVENIMNKEA 457 PF00651.21.fs: domain 1 of 3, from 260 to 297: score 19.3, E = 6.6e-05 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l++ ++ DV + +d ++++AH+ +La +S+ F++l KIAA0740 260 LDNPLCA----DVLFILQD-------QEHIFAHRIYLATSSSKFYDL 295 Ft<-* F+ KIAA0740 296 FL 297 PF00651.21.fs: domain 2 of 3, from 411 to 457: score 14.3, E = 0.0017 *->fealLefiYtgelsitqdqksPssckseenvedlLaaAadllqipsl f+ lL+f+Ytg l+ + e++++ l ++A + l++ +l KIAA0740 411 FRTLLQFLYTGQLDEK-----------EKDLVGLAQIA-EVLEMFDL 445 vdaCeefliksl<-* + ++e+ + k KIAA0740 446 RMMVENIMNKEA 457 PF00651.21.fs: domain 3 of 3, from 475 to 583: score 62.0, E = 8.4e-17 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +e + +g ++DVt++ +d g + AHK L ++ + a+ KIAA0740 475 IKECLSKGTFSDVTFKLDD-------GA-ISAHKPLLICSCEWMAAM 513 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F g + es s e++l++++ +++a+L+++Yt ls++ KIAA0740 514 FGGS------FVESANS-EVYLPNINKISMQAVLDYLYTKQLSPN----- 551 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + + +l+a+A +++ +p+lv + e++ ++ l KIAA0740 552 -----LDLDPLELIALA-NRFCLPHLVALAEQHAVQEL 583 PF00651.21.ls: domain 2 of 2, from 475 to 583: score 63.7, E = 5.4e-16 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +e + +g ++DVt++ +d g + AHK L ++ + a+ KIAA0740 475 IKECLSKGTFSDVTFKLDD-------GA-ISAHKPLLICSCEWMAAM 513 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F g + es s e++l++++ +++a+L+++Yt ls++ KIAA0740 514 FGGS------FVESANS-EVYLPNINKISMQAVLDYLYTKQLSPN----- 551 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + + +l+a+A +++ +p+lv + e++ ++ l KIAA0740 552 -----LDLDPLELIALA-NRFCLPHLVALAEQHAVQEL 583 //