hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11422523/chunk_1/iprscan-20080502-11422523.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0740 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00174 135.9 4.3e-36 1 SM00225 131.0 1.3e-34 2 SM00175 -26.6 1.2e-06 1 SM00173 -45.4 0.00028 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00173 1/1 12 210 .. 1 167 [] -45.4 0.00028 SM00175 1/1 15 210 .. 1 172 [] -26.6 1.2e-06 SM00174 1/1 17 210 .. 1 180 [] 135.9 4.3e-36 SM00225 1/2 266 457 .. 1 114 [] 64.8 1.1e-14 SM00225 2/2 485 583 .. 1 114 [] 66.2 4.1e-15 Alignments of top-scoring domains: SM00173: domain 1 of 1, from 12 to 210: score -45.4, E = 0.00028 *->mreYKlVVlGgGGVGKSALTiQ......FiqghFvdeYDPTI..EDS +++ K VV+G+ VGK+ L + +++++q + + ++ PT D+ KIAA0740 12 VETIKCVVVGDNAVGKTRLICAracnttLTQYQLLATHVPTVwaIDQ 58 Yr..Kqi......eiDgevalLDILDTAGQeEFsAMRdqYmRtG..eGFl Yr +++ +++++++D+ + L DT G + d + G+++ + KIAA0740 59 YRvcQEVlersrdVVDEVSVSLRLWDTFGDHH----KDRRFAYGrsDVVV 104 LVYSitsrqSFeeikkf.reqIlRVKdrddvPivLVGNKcDLe..neRqV L++Si + +S +++k + + I r +P++LVG DL + V KIAA0740 105 LCFSIANPNSLNHVKSMwYPEIKHFCPR--TPVILVGCQLDLRyaDLEAV 152 .................steEGkeLAkqlncpFlEtSAKerinVdeaFyd ++ +++ ++ ++++ e G+e+Ak+l+ p++EtS + + ++F KIAA0740 153 nrarrplarpikrgdilPPEKGREVAKELGLPYYETSVFDQFGIKDVFDN 202 LVReirks<-* +R + s KIAA0740 203 AIRAALIS 210 SM00175: domain 1 of 1, from 15 to 210: score -26.6, E = 1.2e-06 *->FKiilIGDSGVGKSsLLsR......FtddkFsedsksTI.GVD.Fkt K +++GD +VGK+ L++ + +++ t + + +T+ +D++++ KIAA0740 15 IKCVVVGDNAVGKTRLICAracnttLTQYQLLATHVPTVwAIDqYRV 61 ktiev.......dGkrvKLQIWDTAGQE....RFRSiTssYYRGAvGalL + ++++++ d v L +WDT G ++++RF Y ++ ++L KIAA0740 62 CQEVLersrdvvDEVSVSLRLWDTFGDHhkdrRFA------YGRSDVVVL 105 VYDiTnreSFenlkn.WlkelreyadpppenvvimLVGNKsDLee..qRq ++ i n++S +++k+ W e++ ++ +++LVG+ DL+ + + KIAA0740 106 CFSIANPNSLNHVKSmWYPEIKHFCPR----TPVILVGCQLDLRYadLEA 151 Vst.................EeaekficDcAeehgllFifETSAKtntNV V++ +++ ++ ++++ ++E +++ A+e+gl+++ ETS + + + KIAA0740 152 VNRarrplarpikrgdilppEKGREV----AKELGLPYY-ETSVFDQFGI 196 eeAFeelakkIlkr<-* +++F + ++ l KIAA0740 197 KDVFDNAIRAALIS 210 SM00174: domain 1 of 1, from 17 to 210: score 135.9, E = 4.3e-36 *->lVvVGDGaVGKTCLLisYTtnaFPedY......VPTVF..ENYsadv +VvVGD aVGKT L + + n+ ++Y+ ++VPTV + Y ++ KIAA0740 17 CVVVGDNAVGKTRLICARACNTTLTQYqllathVPTVWaiDQYRVCQ 63 ev.......pDgkpvnLgLWDTAGQEdYDRLRPLSYPqtDVfLiCFSVds ev +++++ D v+L LWDT G d R Y +DV+ +CFS+ + KIAA0740 64 EVlersrdvVDEVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIAN 111 paSfeNVkeKWyPEvkhfcPnvPiiLVGtKlDLR.nDedtleelsekkqe p+S++ Vk++WyPE+khfcP +P+iLVG++lDLR D +++++ +++ KIAA0740 112 PNSLNHVKSMWYPEIKHFCPRTPVILVGCQLDLRyADLEAVNRARRPLAR 161 Pvt......teqGeanskialAkeIGAvkYlECSAltqeGvkeVFeeAir P+++++ ++e+G++ +Ake+G Y E+S q G+k+VF+ Air KIAA0740 162 PIKrgdilpPEKGRE-----VAKELGL-PYYETSVFDQFGIKDVFDNAIR 205 aaLnk<-* aaL + KIAA0740 206 AALIS 210 SM00225: domain 1 of 2, from 266 to 457: score 64.8, E = 1.1e-14 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. Dv ++ ++ +++++a H+ +La++ S+ F++lf+ + KIAA0740 266 ADVLFILQD--------QEHIFA--HRIYLATS---SSKFYDLFLMe 299 .................................................. +++++++++ ++++++++ +++ + ++++++++++++ ++ ++ +++ KIAA0740 300 ceespngsegacekekqsrdfqgrilsvdpeeereegppripqadqwkss 349 .................................................. +++ + + + ++ +++++ ++ +++ + +++ + ++ +++ ++ + KIAA0740 350 nkslvealgleaegavpetqtltgwskgfigmhremqvnpiskrmgpmtv 399 ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelAdfld + +d +v+p Fr+lL+flYt++ld +e+ ++ +l ++A+ l KIAA0740 400 VRMDA-----SVQPGPFRTLLQFLYTgQLDEKEK---DLVGLAQIAEVL- 440 SYGqip.lvelCeefllknl<-* ++ +l+ ++e+++ k KIAA0740 441 ---EMFdLRMMVENIMNKEA 457 SM00225: domain 2 of 2, from 485 to 583: score 66.2, E = 4.1e-15 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. +Dvt+ ++ ++a Hk +L ++ ++ a+f ++ KIAA0740 485 SDVTFKLDD---------GAISA--HKPLLICS---CEWMAAMFGGs 517 ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel ++ +++++l+ ++ +++a+L++lYt++l+++ + ++ +el KIAA0740 518 fvesanseVYLPN------INKISMQAVLDYLYTkQLSPNLD--LDPLEL 559 LelAdfldSYGqip.lvelCeefllknl<-* ++lA+++ ++p+lv l e++ ++ l KIAA0740 560 IALANRF----CLPhLVALAEQHAVQEL 583 //