hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11422523/chunk_1/iprscan-20080502-11422523.nocrc
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Query sequence: KIAA0740
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00231 small_GTP: small GTP-binding protein domain    35.9    4.7e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00231   1/1      12   188 ..     1   186 []    35.9  4.7e-08

Alignments of top-scoring domains:
TIGR00231: domain 1 of 1, from 12 to 188: score 35.9, E = 4.7e-08
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptd.gttrdyvte
                        +ik+++vGd +vGk+ l+   + n+   t+++   + +    + +
    KIAA0740    12    VETIKCVVVGDNAVGKTRLICARACNT-TLTQYQLLAtHVPTVWAID 57   

                   sieedgktit.gat.fqW.gykfnllDtpGlhrqedydalrrlyypevls
                   + ++  + ++++       ++ + l+Dt G     d  ++rr  y ++++
    KIAA0740    58 QYRVCQEVLErSRDvVDEvSVSLRLWDTFG-----DHHKDRRFAYGRSDV 102  

                   slevldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekp
                   ++ +++++++ ++++ ++  +++ei+h+++   +p++lvg + dl+ +  
    KIAA0740   103 VVLCFSIANP-NSLNHVKSMWYPEIKHFCP--RTPVILVGCQLDLRYAD- 148  

                   gyfvdlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                     ++++    + l    +  + ++p++ +     + +  + e+   
    KIAA0740   149 --LEAVNRARRPLARPIKRGD-ILPPEKGREVAKELGLPYYET    188  

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