hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11440864/chunk_1/iprscan-20080502-11440864.nocrc
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Query sequence: KIAA0741
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00009.17.ls Elongation factor Tu GTP binding domain     131.2    2.6e-36   1
PF00009.17.fs Elongation factor Tu GTP binding domain     129.6    8.3e-36   1
PF01926.13.fs GTPase of unknown function                   30.7    1.3e-07   1
PF03144.15.fs Elongation factor Tu domain 2                26.0    2.4e-06   2
PF03144.15.ls Elongation factor Tu domain 2                26.7    7.7e-05   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00009.17.ls   1/1     631   848 ..     1   299 []   131.2  2.6e-36
PF00009.17.fs   1/1     631   848 ..     1   299 []   129.6  8.3e-36
PF01926.13.fs   1/1     722   761 ..    80   140 .]    30.7  1.3e-07
PF03144.15.ls   1/1     872   950 ..     1    75 []    26.7  7.7e-05
PF03144.15.fs   1/2     872   950 ..     1    75 []    24.8    5e-06

Alignments of top-scoring domains:
PF00009.17.ls: domain 1 of 1, from 631 to 848: score 131.2, E = 2.6e-36
                   *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge
                       r ++i+++GHVD GKT  +d+L++++  ++e+      g+++++  
    KIAA0741   631    LRAPIICVLGHVDTGKTKILDKLRHTHVQDGEA------GGITQQ-- 669  

                   rkgsfklaaviDkmeeEreRGITIksahvsfewkdededgeteakpgkkr
                             i+++ +  e     +     f++++ +             
    KIAA0741   670 ----------IGATNVPLEAINEQTKMIKNFDRENVR------------- 696  

                   gnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmpGfk
                              iIDTPGH+ F++ + rG + +D+AiLVVd  +G +p   
    KIAA0741   697 ------IPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEP--- 737  

                   GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvpeelyeeleee
                    QT+e ++l++  +  p+i++  +NK+Dr+ ++ k    + ++   l++ 
    KIAA0741   738 -QTIESINLLKSKKC-PFIVA--LNKIDRLYDWKKS--PDSDVAATLKKQ 781  

                   vrellkpIgedfgvidlilaevaeddelmeyylegdeipiipiSallgdn
                    +++  +                       ++   + i+++   a++g+n
    KIAA0741   782 KKNTKDE-----------------------FEERAKAIIVE--FAQQGLN 806  

                   idelsiknkLk.kd.dlslvPwykgiSalknkgrdrgaiptLLeaiddyl
                   ++       L  + +d++ +  ++++Sa ++     g +  L+  ++++ 
    KIAA0741   807 AA-------LFyENkDPRTFVSLVPTSAHTGD----G-MGSLIYLLVELT 844  

                   PsPe<-*
                   ++ +   
    KIAA0741   845 QTML    848  

PF00009.17.fs: domain 1 of 1, from 631 to 848: score 129.6, E = 8.3e-36
                   *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge
                       r ++i+++GHVD GKT  +d+L++++  ++e+      g+++++  
    KIAA0741   631    LRAPIICVLGHVDTGKTKILDKLRHTHVQDGEA------GGITQQ-- 669  

                   rkgsfklaaviDkmeeEreRGITIksahvsfewkdededgeteakpgkkr
                             i+++ +  e     +     f++++ +             
    KIAA0741   670 ----------IGATNVPLEAINEQTKMIKNFDRENVR------------- 696  

                   gnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmpGfk
                              iIDTPGH+ F++ + rG + +D+AiLVVd  +G +p   
    KIAA0741   697 ------IPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEP--- 737  

                   GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvpeelyeeleee
                    QT+e ++l++  +  p+i++  +NK+Dr+ ++ k    + ++   l++ 
    KIAA0741   738 -QTIESINLLKSKKC-PFIVA--LNKIDRLYDWKKS--PDSDVAATLKKQ 781  

                   vrellkpIgedfgvidlilaevaeddelmeyylegdeipiipiSallgdn
                    +++  +                       ++   + i+++   a++g+n
    KIAA0741   782 KKNTKDE-----------------------FEERAKAIIVE--FAQQGLN 806  

                   idelsiknkLk.kd.dlslvPwykgiSalknkgrdrgaiptLLeaiddyl
                   ++       L  + +d++ +  ++++Sa ++     g +  L+  ++++ 
    KIAA0741   807 AA-------LFyENkDPRTFVSLVPTSAHTGD----G-MGSLIYLLVELT 844  

                   PsPe<-*
                   ++ +   
    KIAA0741   845 QTML    848  

PF01926.13.fs: domain 1 of 1, from 722 to 761: score 30.7, E = 1.3e-07
                   *->aDlilfVvDasegltedytieeDleiadllydeerernleltLqele
                      +D++++VvD+ +gl      ++  e ++l                l+
    KIAA0741   722    CDIAILVVDIMHGLE-----PQTIESINL----------------LK 747  

                   kkgkPvilvlNKiD<-*
                    k+ P+i++lNKiD   
    KIAA0741   748 SKKCPFIVALNKID    761  

PF03144.15.ls: domain 1 of 1, from 872 to 950: score 26.7, E = 7.7e-05
                   *->GtVatgRvesGtlkkGdeveiggngtkkyvpevtrVtslemfhg.ld
                      Gt + +++ +G lk Gd++ +   g++   p+vt +++l+ +  + +
    KIAA0741   872    GTTIDVILINGRLKEGDTIIV--PGVEG--PIVTQIRGLLLP-PpMK 913  

                   ea..........vaGdnaGlilagiglkdaaikrGdvla<-*
                   e + +++ +++++ +++ G+ + g++l+ +   +G  l    
    KIAA0741   914 ELrvknqyekhkEVEAAQGVKILGKDLEKT--LAGLPLL    950  

PF03144.15.fs: domain 1 of 2, from 872 to 950: score 24.8, E = 5e-06
                   *->GtVatgRvesGtlkkGdeveiggngtkkyvpevtrVtslemfhg.ld
                      Gt + +++ +G lk Gd++ +   g++   p+vt +++l+ +  + +
    KIAA0741   872    GTTIDVILINGRLKEGDTIIV--PGVEG--PIVTQIRGLLLP-PpMK 913  

                   ea..........vaGdnaGlilagiglkdaaikrGdvla<-*
                   e + +++ +++++ +++ G+ + g++l+ +   +G  l    
    KIAA0741   914 ELrvknqyekhkEVEAAQGVKILGKDLEKT--LAGLPLL    950  

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