hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11455127/chunk_1/iprscan-20080502-11455127.nocrc
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Query sequence: KIAA0742
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02373.13.fs JmjC domain                                     85.6    7.2e-25   1
PF02373.13.ls JmjC domain                                     87.6    3.6e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02373.13.fs   1/1    1168  1281 ..     1   126 []    85.6  7.2e-25
PF02373.13.ls   1/1    1168  1281 ..     1   126 []    87.6  3.6e-23

Alignments of top-scoring domains:
PF02373.13.fs: domain 1 of 1, from 1168 to 1281: score 85.6, E = 7.2e-25
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      ++  +  +++  +  +++  + + ++++ a+++ ++ +  ++ + e 
    KIAA0742  1168    QDGDSDELTIKRFIEGKEKPG-ALWHIYAAKDTEKIREFLKKVSEE- 1212 

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                    +++ ++         +++p++d+ ++ +   +k+l  +e g++ + +vQ
    KIAA0742  1213 -QGQENPA--------DHDPIHDQSWYLDRSLRKRL-HQEYGVQGWAIVQ 1252 

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   + G+ V++++ga+H+v+Nl+++i++a +F   
    KIAA0742  1253 FLGDVVFIPAGAPHQVHNLYSCIKVAEDF    1281 

PF02373.13.ls: domain 1 of 1, from 1168 to 1281: score 87.6, E = 3.6e-23
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      ++  +  +++  +  +++  + + ++++ a+++ ++ +  ++ + e 
    KIAA0742  1168    QDGDSDELTIKRFIEGKEKPG-ALWHIYAAKDTEKIREFLKKVSEE- 1212 

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                    +++ ++         +++p++d+ ++ +   +k+l  +e g++ + +vQ
    KIAA0742  1213 -QGQENPA--------DHDPIHDQSWYLDRSLRKRL-HQEYGVQGWAIVQ 1252 

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   + G+ V++++ga+H+v+Nl+++i++a +F   
    KIAA0742  1253 FLGDVVFIPAGAPHQVHNLYSCIKVAEDF    1281 

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