hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11473829/chunk_1/iprscan-20080502-11473829.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0743 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02210.14.ls Laminin G domain 603.1 2.3e-178 5 PF02210.14.fs Laminin G domain 593.8 1.5e-175 5 PF00054.13.fs Laminin G domain 313.4 3.7e-91 5 PF00054.13.ls Laminin G domain 299.8 4.7e-87 5 PF00008.17.fs EGF-like domain 48.3 1.2e-12 2 PF00008.17.ls EGF-like domain 52.0 1.8e-12 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02210.14.ls 1/5 58 184 .. 1 141 [] 125.2 1.7e-34 PF00054.13.ls 1/5 58 187 .. 1 159 [] 83.1 7.9e-22 PF02210.14.fs 1/5 58 184 .. 1 141 [] 123.3 1.2e-35 PF00054.13.fs 1/5 58 187 .. 1 159 [] 81.3 5.6e-23 PF00054.13.fs 2/5 246 393 .. 1 159 [] 113.7 2.7e-32 PF02210.14.ls 2/5 246 390 .. 1 141 [] 156.5 6.4e-44 PF00054.13.ls 2/5 246 393 .. 1 159 [] 115.6 1.3e-31 PF02210.14.fs 2/5 246 390 .. 1 141 [] 154.5 9.4e-45 PF00008.17.ls 1/2 418 450 .. 1 38 [] 24.0 0.00049 PF02210.14.ls 3/5 484 614 .. 1 141 [] 86.9 5.6e-23 PF02210.14.fs 3/5 484 614 .. 1 141 [] 85.1 1.7e-24 PF00054.13.fs 3/5 531 617 .. 49 159 .] 23.8 1.8e-06 PF02210.14.ls 4/5 670 798 .. 1 141 [] 141.3 2.5e-39 PF00054.13.fs 4/5 670 801 .. 1 159 [] 65.5 1.9e-18 PF00054.13.ls 4/5 670 801 .. 1 159 [] 67.3 4.5e-17 PF02210.14.fs 4/5 670 798 .. 1 141 [] 139.4 2.5e-40 PF00008.17.ls 2/2 824 856 .. 1 38 [] 28.0 3.1e-05 PF00008.17.fs 2/2 824 856 .. 1 38 [] 26.1 2e-06 PF00054.13.fs 5/5 893 967 .. 1 87 [. 29.2 5e-08 PF02210.14.fs 5/5 893 1012 .. 1 141 [] 91.5 2.5e-26 PF02210.14.ls 5/5 893 1012 .. 1 141 [] 93.3 7e-25 Alignments of top-scoring domains: PF02210.14.ls: domain 1 of 5, from 58 to 184: score 125.2, E = 1.7e-34 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+T +q nGl+l++g + ++ L L+dG + l+++l KIAA0743 58 FKT-WQRNGLILHTGKSaD-----------YVNLALKDGAVSLVINL 92 G..sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G++ + ++ ++++nD+ WH+V+v+rn r+vt+sVDg + +g ++ KIAA0743 93 GsgAFEaIVEPVNgKFNDNAWHDVKVTRNLRQVTISVDGIlTTtGyTQED 142 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri + l + +y+GG p ++++++++ s++F GC+++v++ KIAA0743 143 YT--MLGSDDFFYVGGSPSTADLPGSPV---------SnNFMGCLKEVVY 181 nge<-* ++ KIAA0743 182 KNN 184 PF00054.13.ls: domain 1 of 5, from 58 to 187: score 83.1, E = 7.9e-22 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+T++ +Gl+l +G+ ++ + l+L dG + + +l KIAA0743 58 FKTWQRNGLIL--HTGKSADY----------VNLALKDGAVSLVINL 92 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG Gsg +++v + k +nD+ WH v+++rn r++t+sVdg + KIAA0743 93 GSGAFEAIVEPVNGK-FNDNAWHDVKVTRNLRQVTISVDGILT------- 134 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC + ++++ ++t+ L d+ +yvGG P + +++ ++s f GC KIAA0743 135 -TTGYTQE-DYTM----LGSDDFFYVGGSP---STADLPGSPVSNNFMGC 175 irdviingkpld<-* +++v+ + + KIAA0743 176 LKEVVYKNNDIR 187 PF02210.14.fs: domain 1 of 5, from 58 to 184: score 123.3, E = 1.2e-35 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+T +q nGl+l++g + ++ L L+dG + l+++l KIAA0743 58 FKT-WQRNGLILHTGKSaD-----------YVNLALKDGAVSLVINL 92 G..sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G++ + ++ ++++nD+ WH+V+v+rn r+vt+sVDg + +g ++ KIAA0743 93 GsgAFEaIVEPVNgKFNDNAWHDVKVTRNLRQVTISVDGIlTTtGyTQED 142 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri + l + +y+GG p ++++++++ s++F GC+++v++ KIAA0743 143 YT--MLGSDDFFYVGGSPSTADLPGSPV---------SnNFMGCLKEVVY 181 nge<-* ++ KIAA0743 182 KNN 184 PF00054.13.fs: domain 1 of 5, from 58 to 187: score 81.3, E = 5.6e-23 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+T++ +Gl+l +G+ ++ + l+L dG + + +l KIAA0743 58 FKTWQRNGLIL--HTGKSADY----------VNLALKDGAVSLVINL 92 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG Gsg +++v + k +nD+ WH v+++rn r++t+sVdg + KIAA0743 93 GSGAFEAIVEPVNGK-FNDNAWHDVKVTRNLRQVTISVDGILT------- 134 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC + ++++ ++t+ L d+ +yvGG P + +++ ++s f GC KIAA0743 135 -TTGYTQE-DYTM----LGSDDFFYVGGSP---STADLPGSPVSNNFMGC 175 irdviingkpld<-* +++v+ + + KIAA0743 176 LKEVVYKNNDIR 187 PF00054.13.fs: domain 2 of 5, from 246 to 393: score 113.7, E = 2.7e-32 *->FRTtepsGlLllgYn.Gtqterrskkeig...dDFlaleLvdGrlev FRTtep+Gl+l ++G+ er++ + + ++++DF+a+eL dG+l++ KIAA0743 246 FRTTEPNGLIL--FThGKPQERKDARSQKntkVDFFAVELLDGNLYL 290 sydlGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskk +d Gsg + v +++k nDG W++v + r grsgt+sV+ +++ KIAA0743 291 LLDMGSG---TIKVKATQKKANDGEWYHVDIQRDGRSGTISVNSRRT--- 334 tLgGsvvtgesplgattesttLdvdgkLyvGGlPel....dqavkarrla p +a +es++Ld++g +y+GGlPe + + ++ ++++ + KIAA0743 335 -----------PFTASGESEILDLEGDMYLGGLPENraglILPTELWTAM 373 ispsfkGCirdviingkpld<-* +++++GCird+ i+g+ + KIAA0743 374 LNYGYVGCIRDLFIDGRSKN 393 PF02210.14.ls: domain 2 of 5, from 246 to 390: score 156.5, E = 6.4e-44 *->FRTatqpnGlLlyaggk.g...lp.dradpksdKflaLeLvdGrlvl FRT t+pnGl+l+++gk++++++ +++ + k d f+a+eL dG l+l KIAA0743 246 FRT-TEPNGLILFTHGKpQerkDArSQKNTKVD-FFAVELLDGNLYL 290 rydlGsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.sp +d+Gsg+ + ++++ nDG+W +V + r+grs+t+sV+ +++ + s+ KIAA0743 291 LLDMGSGTiKVKATQkKANDGEWYHVDIQRDGRSGTISVNSRrTPfTaSG 340 gssdtlslnlngplylGGlpesskssllrliaaqn.lvtvs.gFvGCirn +s+ +l+l+g++ylGGlpe+++ l++ ++++ l + g+vGCir+ KIAA0743 341 ESE---ILDLEGDMYLGGLPENRAGLILPTELWTAmL---NyGYVGCIRD 384 vringe<-* ++i+g+ KIAA0743 385 LFIDGR 390 PF00054.13.ls: domain 2 of 5, from 246 to 393: score 115.6, E = 1.3e-31 *->FRTtepsGlLllgYn.Gtqterrskkeig...dDFlaleLvdGrlev FRTtep+Gl+l ++G+ er++ + + ++++DF+a+eL dG+l++ KIAA0743 246 FRTTEPNGLIL--FThGKPQERKDARSQKntkVDFFAVELLDGNLYL 290 sydlGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskk +d Gsg + v +++k nDG W++v + r grsgt+sV+ +++ KIAA0743 291 LLDMGSG---TIKVKATQKKANDGEWYHVDIQRDGRSGTISVNSRRT--- 334 tLgGsvvtgesplgattesttLdvdgkLyvGGlPel....dqavkarrla p +a +es++Ld++g +y+GGlPe + + ++ ++++ + KIAA0743 335 -----------PFTASGESEILDLEGDMYLGGLPENraglILPTELWTAM 373 ispsfkGCirdviingkpld<-* +++++GCird+ i+g+ + KIAA0743 374 LNYGYVGCIRDLFIDGRSKN 393 PF02210.14.fs: domain 2 of 5, from 246 to 390: score 154.5, E = 9.4e-45 *->FRTatqpnGlLlyaggk.g...lp.dradpksdKflaLeLvdGrlvl FRT t+pnGl+l+++gk++++++ +++ + k d f+a+eL dG l+l KIAA0743 246 FRT-TEPNGLILFTHGKpQerkDArSQKNTKVD-FFAVELLDGNLYL 290 rydlGsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.sp +d+Gsg+ + ++++ nDG+W +V + r+grs+t+sV+ +++ + s+ KIAA0743 291 LLDMGSGTiKVKATQkKANDGEWYHVDIQRDGRSGTISVNSRrTPfTaSG 340 gssdtlslnlngplylGGlpesskssllrliaaqn.lvtvs.gFvGCirn +s+ +l+l+g++ylGGlpe+++ l++ ++++ l + g+vGCir+ KIAA0743 341 ESE---ILDLEGDMYLGGLPENRAGLILPTELWTAmL---NyGYVGCIRD 384 vringe<-* ++i+g+ KIAA0743 385 LFIDGR 390 PF00008.17.ls: domain 1 of 2, from 418 to 450: score 24.0, E = 0.00049 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C++ pC+n++ C d+++ + C+C+ +y G++C KIAA0743 418 CDSY--PCKNNAVCKDGWNRFICDCTGT---GYWGRTC 450 PF02210.14.ls: domain 3 of 5, from 484 to 614: score 86.9, E = 5.6e-23 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F ++ GlL + ++++ d l LeL +Gr++l ++l KIAA0743 484 FMS-QRAYGLLVATTSRdS--------AD-TLRLELDGGRVKLMVNL 520 G........sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv. + + ++s+g+ +l+ g++lnD++WHtV+v+r+g+s++L+VD+ + + KIAA0743 521 DcirincnsSKGpETLYAGqKLNDNEWHTVRVVRRGKSLKLTVDDDvAEg 570 g.spgssdtlslnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvG + ++++ l+ + + G+ + + +++ ++F G KIAA0743 571 TmVGDHT---RLEFHNIeT---GIMTEKRYISVV----------PsSFIG 604 Cirnvringe<-* ++++ +ng KIAA0743 605 HLQSLMFNGL 614 PF02210.14.fs: domain 3 of 5, from 484 to 614: score 85.1, E = 1.7e-24 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F ++ GlL + ++++ d l LeL +Gr++l ++l KIAA0743 484 FMS-QRAYGLLVATTSRdS--------AD-TLRLELDGGRVKLMVNL 520 G........sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv. + + ++s+g+ +l+ g++lnD++WHtV+v+r+g+s++L+VD+ + + KIAA0743 521 DcirincnsSKGpETLYAGqKLNDNEWHTVRVVRRGKSLKLTVDDDvAEg 570 g.spgssdtlslnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvG + ++++ l+ + + G+ + + +++ ++F G KIAA0743 571 TmVGDHT---RLEFHNIeT---GIMTEKRYISVV----------PsSFIG 604 Cirnvringe<-* ++++ +ng KIAA0743 605 HLQSLMFNGL 614 PF00054.13.fs: domain 3 of 5, from 531 to 617: score 23.8, E = 1.8e-06 *->sgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVd.gearskkt +g p ++ +g+k lnD+ WH+v ++r g+s+ L Vd++ a KIAA0743 531 KG---PETLYAGQK-LNDNEWHTVRVVRRGKSLKLTVDdDVAE---- 569 LgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsf g+++++ t L + + + + ++++k+++ ++ sf KIAA0743 570 -------GTMVGDHTR----LEFHN------IETGIMTEKRYISVVPSSF 602 kGCirdviingkpld<-* G ++++++ng + KIAA0743 603 IGHLQSLMFNGLLYI 617 PF02210.14.ls: domain 4 of 5, from 670 to 798: score 141.3, E = 2.5e-39 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+T t+p+G++l+++g+++ d f+a+eLv G++++++dl KIAA0743 670 FKT-TSPDGFILFNSGDgN---------D-FIAVELVKGYIHYVFDL 705 G.sgg.vlltsg.plnDGqWHtVsverngrs.vtLsVDgg.vv.g.spgs G+++ + s++plnD+qWH+V+++r+++++ +L+VD + v ++ ++ + KIAA0743 706 GnGPNvIKGNSDrPLNDNQWHNVVITRDNSNtHSLKVDTKvVTqViNGAK 755 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri +l+l+g+ly Gl ++ s+l++l a ++gF+GC+ +v + KIAA0743 756 ----NLDLKGDLYMAGLAQGMYSNLPKLVAS------RdGFQGCLASVDL 795 nge<-* ng+ KIAA0743 796 NGR 798 PF00054.13.fs: domain 4 of 5, from 670 to 801: score 65.5, E = 1.9e-18 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+Tt+p+G +l+ +++ ++++ a+eLv+G +++ +dl KIAA0743 670 FKTTSPDGFILFNSGDGNDFI-----------AVELVKGYIHYVFDL 705 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsg.tLsVdgearskktLg G+g + ++ d+ lnD++WH v+++r +++ ++L+Vd KIAA0743 706 GNG--PNVIKGNSDRPLNDNQWHNVVITRDNSNThSLKVDTKV------- 746 GsvvtgesplgattesttLdvdgkLyvGG.lPeldqavkarrlaisps.f +++++ + +Ld++g Ly +G + ++ +++l+ s+++f KIAA0743 747 -----VTQVINGAK---NLDLKGDLYMAGlAQ--GMYSNLPKLVASRDgF 786 kGCirdviingkpld<-* GC+ +v++ng+ d KIAA0743 787 QGCLASVDLNGRLPD 801 PF00054.13.ls: domain 4 of 5, from 670 to 801: score 67.3, E = 4.5e-17 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+Tt+p+G +l+ +++ ++++ a+eLv+G +++ +dl KIAA0743 670 FKTTSPDGFILFNSGDGNDFI-----------AVELVKGYIHYVFDL 705 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsg.tLsVdgearskktLg G+g + ++ d+ lnD++WH v+++r +++ ++L+Vd KIAA0743 706 GNG--PNVIKGNSDRPLNDNQWHNVVITRDNSNThSLKVDTKV------- 746 GsvvtgesplgattesttLdvdgkLyvGG.lPeldqavkarrlaisps.f +++++ + +Ld++g Ly +G + ++ +++l+ s+++f KIAA0743 747 -----VTQVINGAK---NLDLKGDLYMAGlAQ--GMYSNLPKLVASRDgF 786 kGCirdviingkpld<-* GC+ +v++ng+ d KIAA0743 787 QGCLASVDLNGRLPD 801 PF02210.14.fs: domain 4 of 5, from 670 to 798: score 139.4, E = 2.5e-40 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+T t+p+G++l+++g+++ d f+a+eLv G++++++dl KIAA0743 670 FKT-TSPDGFILFNSGDgN---------D-FIAVELVKGYIHYVFDL 705 G.sgg.vlltsg.plnDGqWHtVsverngrs.vtLsVDgg.vv.g.spgs G+++ + s++plnD+qWH+V+++r+++++ +L+VD + v ++ ++ + KIAA0743 706 GnGPNvIKGNSDrPLNDNQWHNVVITRDNSNtHSLKVDTKvVTqViNGAK 755 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri +l+l+g+ly Gl ++ s+l++l a ++gF+GC+ +v + KIAA0743 756 ----NLDLKGDLYMAGLAQGMYSNLPKLVAS------RdGFQGCLASVDL 795 nge<-* ng+ KIAA0743 796 NGR 798 PF00008.17.ls: domain 2 of 2, from 824 to 856: score 28.0, E = 3.1e-05 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+++ C n G C++ ++g+tC+C + +y+G +C KIAA0743 824 CQED--SCANQGVCMQQWEGFTCDCSMT---SYSGNQC 856 PF00008.17.fs: domain 2 of 2, from 824 to 856: score 26.1, E = 2e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+++ C n G C++ ++g+tC+C + +y+G +C KIAA0743 824 CQED--SCANQGVCMQQWEGFTCDCSMT---SYSGNQC 856 PF00054.13.fs: domain 5 of 5, from 893 to 967: score 29.2, E = 5e-08 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+Tt +G+L +++++ + DFl l + G++ v ++ KIAA0743 893 FSTTVKDGILV--RIDSAPGLG-------DFLQLHIEQGKIGVVFNI 930 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdg<-* G ++++ + + +nDGk+H v +rng ++tL+Vd+ KIAA0743 931 GTV---DISIKEERTPVNDGKYHVVRFTRNGGNATLQVDN 967 PF02210.14.fs: domain 5 of 5, from 893 to 1012: score 91.5, E = 2.5e-26 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F T t ++G+L + +++g +d fl+L +++G++ ++++ KIAA0743 893 FST-TVKDGILVRIDSApG-------LGD-FLQLHIEQGKIGVVFNI 930 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd G+ + ++ +p+nDG+ H V+++rng+++tL+VD+ +v++ ++g + KIAA0743 931 GTVDiSIKEERtPVNDGKYHVVRFTRNGGNATLQVDNWpVNeHyPTGRQL 980 tlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvring t ++n++ ++ +GG + ++ F+G +++++++g KIAA0743 981 T-IFNTQAQIAIGGKDK------------------GrLFQGQLSGLYYDG 1011 e<-* KIAA0743 1012 L 1012 PF02210.14.ls: domain 5 of 5, from 893 to 1012: score 93.3, E = 7e-25 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F T t ++G+L + +++g +d fl+L +++G++ ++++ KIAA0743 893 FST-TVKDGILVRIDSApG-------LGD-FLQLHIEQGKIGVVFNI 930 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd G+ + ++ +p+nDG+ H V+++rng+++tL+VD+ +v++ ++g + KIAA0743 931 GTVDiSIKEERtPVNDGKYHVVRFTRNGGNATLQVDNWpVNeHyPTGRQL 980 tlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvring t ++n++ ++ +GG + ++ F+G +++++++g KIAA0743 981 T-IFNTQAQIAIGGKDK------------------GrLFQGQLSGLYYDG 1011 e<-* KIAA0743 1012 L 1012 //