hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11473829/chunk_1/iprscan-20080502-11473829.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0743 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00282 617.7 4e-181 5 SM00181 33.7 2.4e-05 2 SM00294 32.1 7.9e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00282 1/5 50 184 .. 1 137 [] 141.0 1.3e-37 SM00282 2/5 238 390 .. 1 137 [] 152.4 4.8e-41 SM00181 1/2 417 451 .. 1 32 [] 22.6 0.054 SM00282 3/5 476 614 .. 1 137 [] 101.7 8.6e-26 SM00282 4/5 662 798 .. 1 137 [] 139.4 3.7e-37 SM00181 2/2 823 857 .. 1 32 [] 11.1 27 SM00282 5/5 885 1012 .. 1 137 [] 83.2 3.1e-20 SM00294 1/1 1151 1169 .. 1 19 [] 32.1 7.9e-05 Alignments of top-scoring domains: SM00282: domain 1 of 5, from 50 to 184: score 141.0, E = 1.3e-37 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++ +i++sF+T++ nGl+l++g+ d++ l+L+ dG + l++ KIAA0743 50 SsDEITLSFKTWQRNGLILHTGkSADYVNLALK------DGAVSLVI 90 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv +lGs g+++ ++++ + ++nD+ WH+V+v+rn r+vt+sVDg +++ KIAA0743 91 NLGS----GAFEAIVEPV-NGKFNDNAWHDVKVTRNLRQVTISVDGILTT 135 sges....t.LdldkeesgplylGGlPe......lpvspgFrGCirnlrv +g+++++ t L +d + +y+GG P++ + +++pvs++F GC++++++ KIAA0743 136 TGYTqedyTmLGSD----DFFYVGGSPStadlpgSPVSNNFMGCLKEVVY 181 ngk<-* ++ KIAA0743 182 KNN 184 SM00282: domain 2 of 5, from 238 to 390: score 152.4, E = 4.8e-41 *->t.lsisfsFrTtspnGlLlyag...............ggdflaleLv + +sisf+FrTt+pnGl+l+++++++++++ +++++++ df+a+eL KIAA0743 238 RmGSISFDFRTTEPNGLILFTHgkpqerkdarsqkntKVDFFAVELL 284 lEDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsvern dG+l+l +d+Gs g++++ +++ ++ nDG+W++V ++r+ KIAA0743 285 ------DGNLYLLLDMGS----GTIKVKATQ---KKANDGEWYHVDIQRD 321 grsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe........ grs+t+sV+ ++++ +++++++ Ldl+ g++ylGGlPe++ + + KIAA0743 322 GRSGTISVN-SRRTPFTAsgesEiLDLE----GDMYLGGLPEnraglilp 366 .....lpvspgFrGCirnlrvngk<-* ++ + + g++GCir+l+++g+ KIAA0743 367 telwtAMLNYGYVGCIRDLFIDGR 390 SM00181: domain 1 of 2, from 417 to 451: score 22.6, E = 0.054 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C++ pC n+ ++C ++ + + C+C g Gy g++Ce KIAA0743 417 QCDsyPCKNN-----AVCKdgwnRFICdCTGTGYWGrTCE 451 SM00282: domain 3 of 5, from 476 to 614: score 101.7, E = 8.6e-26 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++sf+F + + GlL+ +++++ d l leL +Gr++l KIAA0743 476 EaEDVSFRFMSQRAYGLLVATTsrdSADTLRLELD------GGRVKL 516 rydlGsst.....tggparltsdsdrptplnDGqWHrVsverngrsvtLs +++l++++ + ++++gp +l+++ ++lnD++WH+V+v+r g+s+ L+ KIAA0743 517 MVNLDCIRincnsSKGPETLYAG----QKLNDNEWHTVRVVRRGKSLKLT 562 VDggnpvsges....t.LdldkeesgplylGGlPe....lpvspgFrGCi VD + ++g+ +++t+L+++ ++ G + e++ ++v ++F G + KIAA0743 563 VD-DDVAEGTMvgdhTrLEFH-----NIETGIMTEkryiSVVPSSFIGHL 606 rnlrvngk<-* ++l++ng KIAA0743 607 QSLMFNGL 614 SM00282: domain 4 of 5, from 662 to 798: score 139.4, E = 3.7e-37 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr t++++ f+F+Ttsp+G++l+++++g+df+a+eLv G+++++ KIAA0743 662 TsMHLFFQFKTTSPDGFILFNSgdGNDFIAVELV------KGYIHYV 702 ydlGssttggparltsdsdrptplnDGqWHrVsvern.grsvtLsVDggn +dlG+ gp ++ +s ++plnD+qWH V+++r++ ++ +L+VD + KIAA0743 703 FDLGN----GPNVIKGNS--DRPLNDNQWHNVVITRDnSNTHSLKVD-TK 745 pvsges...t.LdldkeesgplylGGlPe.........lpvspgFrGCir v++++++ ++Ldl+ g+ly Gl + ++ ++ +++++gF+GC+ KIAA0743 746 VVTQVIngaKnLDLK----GDLYMAGLAQgmysnlpklVASRDGFQGCLA 791 nlrvngk<-* ++ +ng+ KIAA0743 792 SVDLNGR 798 SM00181: domain 2 of 2, from 823 to 857: score 11.1, E = 27 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C+++ C n G+C +++tC+C y+g++C KIAA0743 823 TCQedSCANQ-----GVCMqqweGFTCdCSMTSYSGnQCN 857 SM00282: domain 5 of 5, from 885 to 1012: score 83.2, E = 3.1e-20 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv ++ ++ + F Tt ++G+L+ +++ ++ gdfl+l+++ +G++ KIAA0743 885 RsDRLAVGFSTTVKDGILVRIDsapgLGDFLQLHIE------QGKIG 925 lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg ++++ G ++ ++ + + +tp+nDG++H V+++rng+++tL+VD KIAA0743 926 VVFNIG------TVDISIKEE-RTPVNDGKYHVVRFTRNGGNATLQVD-N 967 npvsges......t.LdldkeesgplylGGlPelpvspgFrGCirnlrvn pv+++ +++++ t ++++ +++ +GG F+G +++l+++ KIAA0743 968 WPVNEHYptgrqlTiFNTQ----AQIAIGGKD---KGRLFQGQLSGLYYD 1010 gk<-* g KIAA0743 1011 GL 1012 SM00294: domain 1 of 1, from 1151 to 1169: score 32.1, E = 7.9e-05 *->myrykkRdkGSYhtnEakg<-* my+y++Rd+GSY ++E ++ KIAA0743 1151 MYKYRNRDEGSYQVDETRN 1169 //