hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11542406/chunk_1/iprscan-20080502-11542406.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0747 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00168.20.ls C2 domain 390.4 2.5e-114 5 PF00168.20.fs C2 domain 380.8 1.2e-112 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/5 289 375 .. 1 88 [] 87.0 2.6e-25 PF00168.20.ls 1/5 289 375 .. 1 88 [] 88.9 1.4e-23 PF00168.20.ls 2/5 438 526 .. 1 88 [] 51.9 2e-12 PF00168.20.fs 2/5 438 526 .. 1 88 [] 50.0 2.6e-14 PF00168.20.ls 3/5 617 703 .. 1 88 [] 116.1 9.3e-32 PF00168.20.fs 3/5 617 703 .. 1 88 [] 114.2 2.2e-33 PF00168.20.fs 4/5 768 845 .. 1 88 [] 59.1 5e-17 PF00168.20.ls 4/5 768 845 .. 1 88 [] 61.0 3.6e-15 PF00168.20.fs 5/5 956 1045 .. 1 88 [] 70.5 2e-20 PF00168.20.ls 5/5 956 1045 .. 1 88 [] 72.5 1.2e-18 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 5, from 289 to 375: score 87.0, E = 2.6e-25 *->LrVtvieAknLppkDk.....kngksDPYVkvylggdkkdqkkkTkv +r++++ A++L kDk ++ + gksDPY+ v+lg q++ ++v KIAA0747 289 IRIHLLAARGLSSKDKyvkglIEGKSDPYALVRLGT----QTFCSRV 331 ikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* i+ lNP+W Et+++ v++ ++qe +e+eV+D+d ++ ddflG+ + KIAA0747 332 IDEELNPQWGETYEVMVHEVPGQE-IEVEVFDKDPDK-DDFLGRMK 375 PF00168.20.ls: domain 1 of 5, from 289 to 375: score 88.9, E = 1.4e-23 *->LrVtvieAknLppkDk.....kngksDPYVkvylggdkkdqkkkTkv +r++++ A++L kDk ++ + gksDPY+ v+lg q++ ++v KIAA0747 289 IRIHLLAARGLSSKDKyvkglIEGKSDPYALVRLGT----QTFCSRV 331 ikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* i+ lNP+W Et+++ v++ ++qe +e+eV+D+d ++ ddflG+ + KIAA0747 332 IDEELNPQWGETYEVMVHEVPGQE-IEVEVFDKDPDK-DDFLGRMK 375 PF00168.20.ls: domain 2 of 5, from 438 to 526: score 51.9, E = 2e-12 *->LrVtvieAknLppkDk.........kngksDPYVkvylggdkkdqkk L+V++ +A++Lp + ++ +++ ++ n ++P V +++ + +++ KIAA0747 438 LVVYLDRAQDLPMVTSelyppqlkkGNKEPNPMVQLSIQD----VTQ 480 kTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs +k + +t +PvW+E F F + +p+ qe L ++V+D+ r lG + KIAA0747 481 ESKAVYSTNCPVWEEAFRFFLQDPQSQE-LDVQVKDDSRAL---TLGALT 526 <-* KIAA0747 - - PF00168.20.fs: domain 2 of 5, from 438 to 526: score 50.0, E = 2.6e-14 *->LrVtvieAknLppkDk.........kngksDPYVkvylggdkkdqkk L+V++ +A++Lp + ++ +++ ++ n ++P V +++ + +++ KIAA0747 438 LVVYLDRAQDLPMVTSelyppqlkkGNKEPNPMVQLSIQD----VTQ 480 kTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs +k + +t +PvW+E F F + +p+ qe L ++V+D+ r lG + KIAA0747 481 ESKAVYSTNCPVWEEAFRFFLQDPQSQE-LDVQVKDDSRAL---TLGALT 526 <-* KIAA0747 - - PF00168.20.ls: domain 3 of 5, from 617 to 703: score 116.1, E = 9.3e-32 *->LrVtvieAknLppkDk.....kngksDPYVkvylggdkkdqkkkTkv Lr++v+eA++L++kD ++ ++gksDPYVk++l g ++++v KIAA0747 617 LRIHVLEAQDLIAKDRflgglVKGKSDPYVKLKLAG----RSFRSHV 659 ikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* ++ +lNP+WNE+F++ v+ ++qe Le+eV+D+d ++ ddflG+++ KIAA0747 660 VREDLNPRWNEVFEVIVTSVPGQE-LEVEVFDKDLDK-DDFLGRCK 703 PF00168.20.fs: domain 3 of 5, from 617 to 703: score 114.2, E = 2.2e-33 *->LrVtvieAknLppkDk.....kngksDPYVkvylggdkkdqkkkTkv Lr++v+eA++L++kD ++ ++gksDPYVk++l g ++++v KIAA0747 617 LRIHVLEAQDLIAKDRflgglVKGKSDPYVKLKLAG----RSFRSHV 659 ikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* ++ +lNP+WNE+F++ v+ ++qe Le+eV+D+d ++ ddflG+++ KIAA0747 660 VREDLNPRWNEVFEVIVTSVPGQE-LEVEVFDKDLDK-DDFLGRCK 703 PF00168.20.fs: domain 4 of 5, from 768 to 845: score 59.1, E = 5e-17 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl L+++ +A++Lp + + + +PY+++++g+ + +kTk+i t+ KIAA0747 768 LSIYMERAEDLPLRK-GTKHLSPYATLTVGD----SSHKTKTISQTS 809 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* PvW+E+ F + p+ ++ Le++V +++ +lG s KIAA0747 810 APVWDESASFLIRKPHTES-LELQVRGEGTG----VLGSLS 845 PF00168.20.ls: domain 4 of 5, from 768 to 845: score 61.0, E = 3.6e-15 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl L+++ +A++Lp + + + +PY+++++g+ + +kTk+i t+ KIAA0747 768 LSIYMERAEDLPLRK-GTKHLSPYATLTVGD----SSHKTKTISQTS 809 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* PvW+E+ F + p+ ++ Le++V +++ +lG s KIAA0747 810 APVWDESASFLIRKPHTES-LELQVRGEGTG----VLGSLS 845 PF00168.20.fs: domain 5 of 5, from 956 to 1045: score 70.5, E = 2e-20 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L+ v+ ++ L+ + +DPYV + l++dk +++k++T+ +k+t KIAA0747 956 LVSIVHGCRSLRQ-N-GRDPPDPYVSLLLLPDKNRgTKRRTSQKKRT 1000 lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgr..ddflGevs<-* l+P++NE F++e+p+++ q+++L ++V+ + +f +++ ++lG+v+ KIAA0747 1001 LSPEFNERFEWELPLDEAQRrKLDVSVKSNSSFMSreRELLGKVQ 1045 PF00168.20.ls: domain 5 of 5, from 956 to 1045: score 72.5, E = 1.2e-18 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L+ v+ ++ L+ + +DPYV + l++dk +++k++T+ +k+t KIAA0747 956 LVSIVHGCRSLRQ-N-GRDPPDPYVSLLLLPDKNRgTKRRTSQKKRT 1000 lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgr..ddflGevs<-* l+P++NE F++e+p+++ q+++L ++V+ + +f +++ ++lG+v+ KIAA0747 1001 LSPEFNERFEWELPLDEAQRrKLDVSVKSNSSFMSreRELLGKVQ 1045 //