hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12095879/chunk_1/iprscan-20080502-12095879.nocrc
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Query sequence: KIAA0756
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00409 239.1 3.8e-67 6
SM00408 230.1 1.8e-64 6
SM00060 153.0 3.1e-41 4
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00409 1/6 95 184 .. 1 58 [] 14.7 4.3
SM00408 1/6 101 172 .. 1 56 [] 19.5 0.051
SM00409 2/6 194 281 .. 1 58 [] 40.2 2.9e-07
SM00408 2/6 200 267 .. 1 56 [] 7.4 0.94
SM00409 3/6 317 398 .. 1 58 [] 57.6 1.6e-12
SM00408 3/6 323 387 .. 1 56 [] 74.0 1.8e-17
SM00409 4/6 407 490 .. 1 58 [] 32.6 5.4e-05
SM00408 4/6 413 479 .. 1 56 [] 44.0 1.9e-08
SM00409 5/6 501 583 .. 1 58 [] 40.0 3.3e-07
SM00408 5/6 507 572 .. 1 56 [] 50.2 2.7e-10
SM00409 6/6 592 674 .. 1 58 [] 54.1 1.8e-11
SM00408 6/6 598 663 .. 1 56 [] 35.0 1e-05
SM00060 1/4 677 760 .. 1 69 [] 51.8 8.7e-11
SM00060 2/4 777 859 .. 1 69 [] 35.6 6.8e-06
SM00060 3/4 875 966 .. 1 69 [] 28.9 0.00072
SM00060 4/4 981 1065 .. 1 69 [] 36.7 3.1e-06
Alignments of top-scoring domains:
SM00409: domain 1 of 6, from 95 to 184: score 14.7, E = 4.3
*->pp.vtvkeGesvtLtC.as.....titWy..................
+++ v + +++ ++C+a++++ ++++W+++++ + ++++ + ++
KIAA0756 95 AKdHIVDPRDNILIECeAKgnpapSFHWTrnsrffniakdprvsmrr 141
....LtInvtpeDse.....sgGtYtCaat..sgsasseqgttLtVl<-*
++++L+I+ + +++++ + G+Y+C a+++ g+a s + ++L+V+
KIAA0756 142 rsgtLVIDFRSG--GrpeeyE-GEYQCFARnkFGTALS-NRIRLQVS 184
SM00408: domain 1 of 6, from 101 to 172: score 19.5, E = 0.051
*->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt
+ +++ ++C+a g+p+p+++W++++ + ++++ + ++ ++tL
KIAA0756 101 DPRDNILIECEAKGNPAPSFHWTRnSRFFNiakdprvsmrrRSGTLV 147
i...knvs.leDsGlYtCvArNsvg<-*
i+ ++ +++e +G+Y+C+ArN+ g
KIAA0756 148 IdfrSGGRpEEYEGEYQCFARNKFG 172
SM00409: domain 2 of 6, from 194 to 281: score 40.2, E = 2.9e-07
*->pp.vtvkeGesvtLtC.as......titWy.................
+v+v+eG ++tL+C+ +++ +++ i+W++++ + +++++ ++++
KIAA0756 194 LDpVVVQEGAPLTLQCnPPpglpspVIFWMsssmepitqdkrvsqgh 240
...LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-*
+++L ++nv ++D + +Y C a+ + ++ +++ +++tL+Vl
KIAA0756 241 ngdLYFsNVMLQDMQ--TDYSCNARfhftHTIQQK-NPFTLKVL 281
SM00408: domain 2 of 6, from 200 to 267: score 7.4, E = 0.94
*->leGqsVtLtCp.asgdpvpnItWlk..gkplp........sgstLti
+eG ++tL+C + g p p I W ++ +p+ ++++ ++++++ L +
KIAA0756 200 QEGAPLTLQCNpPPGLPSPVIFWMSssMEPITqdkrvsqgHNGDLYF 246
knvsleDsGl.YtCvArNsvg<-*
+nv l D ++Y+C Ar +
KIAA0756 247 SNVMLQDMQTdYSCNARFHFT 267
SM00409: domain 3 of 6, from 317 to 398: score 57.6, E = 1.6e-12
*->pp.vtvkeGesvtLtC.as.....titWy..................
+++ v +G ++ L+C as+ +++ i Wy+++++ ++++ + + ++
KIAA0756 317 ASsQMVLRGMDLLLECiASgvptpDIAWYkkggdlpsdkakfenfnk 363
.LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
L+I+nv++eDs G+Y+C a+++ gs+ ++ ++V+
KIAA0756 364 aLRItNVSEEDS---GEYFCLASnkMGSIRH--TISVRVK 398
SM00408: domain 3 of 6, from 323 to 387: score 74.0, E = 1.8e-17
*->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn
l G ++ L+C+asg p+p+I W+k+g lp+++ + ++ ++ L+i+n
KIAA0756 323 LRGMDLLLECIASGVPTPDIAWYKkGGDLPsdkakfenFNKALRITN 369
vsleDsGlYtCvArNsvg<-*
vs+eDsG+Y C+A+N++g
KIAA0756 370 VSEEDSGEYFCLASNKMG 387
SM00409: domain 4 of 6, from 407 to 490: score 32.6, E = 5.4e-05
*->pp.vtvkeGesvtLtC.as.....titWy..................
p+++ +Ge+ +L C+a++++++t++W+ ++ + ++ ++++++
KIAA0756 407 PKnLILAPGEDGRLVCrANgnpkpTVQWMvngeplqsappnpnreva 453
...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
++++++++ + + ++Y+C ++ +g + ++ ++Vl
KIAA0756 454 gdtIIFrDTQISSR---AVYQCNTSneHGYLLA--NAFVSVL 490
SM00408: domain 4 of 6, from 413 to 479: score 44.0, E = 1.9e-08
*->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti
+G++ +L C+a+g+p p+++W +g+pl++ +++++++ g t +
KIAA0756 413 APGEDGRLVCRANGNPKPTVQWMVnGEPLQsappnpnrevAGDTIIF 459
knvsleDsGlYtCvArNsvg<-*
++ + + + +Y+C +N++g
KIAA0756 460 RDTQISSRAVYQCNTSNEHG 479
SM00409: domain 5 of 6, from 501 to 583: score 40.0, E = 3.3e-07
*->pp.vtvkeGesvtLtC.as.....titWy..................
+ + v + + +L C++ +++ +t++W++++++++ ++++ + +
KIAA0756 501 NQlIRVILYNRTRLDCpFFgspipTLRWFkngqgsnldggnyhvyen 547
..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
++L+I+ +++eD+ G+YtC+at+ g+a+ ++L+V+
KIAA0756 548 gsLEIkMIRKEDQ---GIYTCVATniLGKAEN--QVRLEVK 583
SM00408: domain 5 of 6, from 507 to 572: score 50.2, E = 2.7e-10
*->leGqsVtLtCpasgdpvpnItWlk...gkplp.......sgstLtik
+ + +L Cp g+p p+ +W+k+++g+ l++++ + +++L+ik
KIAA0756 507 ILYNRTRLDCPFFGSPIPTLRWFKngqGSNLDggnyhvyENGSLEIK 553
nvsleDsGlYtCvArNsvg<-*
+++eD G+YtCvA+N g
KIAA0756 554 MIRKEDQGIYTCVATNILG 572
SM00409: domain 6 of 6, from 592 to 674: score 54.1, E = 1.8e-11
*->pp.vtvkeGesvtLtC.as.......titWy................
p+++++++G +v+L+C+++++++ + t++W++++ + +++ ++ +
KIAA0756 592 PEdQVARRGTTVQLECrVKhdpslklTVSWLkddeplyignrmkked 638
..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
++LtI +v + D+ G YtC+a++ ++ + ++LtVl
KIAA0756 639 dsLTIfGVAERDQ---GSYTCVASteLDQDLA--KAYLTVL 674
SM00408: domain 6 of 6, from 598 to 663: score 35.0, E = 1e-05
*->leGqsVtLtCpasgdpvp....nItWlk.gkplp.......sgstLt
+ G++V+L+C+ +++p+ + +++Wlk+++pl +++ ++ + +Lt
KIAA0756 598 RRGTTVQLECR--VKHDPslklTVSWLKdDEPLYignrmkkEDDSLT 642
iknvsleDsGlYtCvArNsvg<-*
i v++ D G YtCvA+ +
KIAA0756 643 IFGVAERDQGSYTCVASTELD 663
SM00060: domain 1 of 4, from 677 to 760: score 51.8, E = 8.7e-11
*->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
P+ P++ l++td ++ sv+l+W p + ++++i+ Y+++
KIAA0756 677 PDRPRD---LELTDLAER------SVRLTWIPGdannspITDYVvqf 714
......................ytltgLkPgaepwteYefrVrAvngnda
++++ +++++ + ++ ++++++++l+ L+P+ +Y+frV+A+n+ +
KIAA0756 715 eedqfqpgvwhdhskypgsvnsAVLR-LSPY----VNYQFRVIAINE--V 757
Geg<-*
G++
KIAA0756 758 GSS 760
SM00060: domain 2 of 4, from 777 to 859: score 35.6, E = 6.8e-06
*->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv
+ P++ ++ + + ++ ++++W+p + + +++ +iv
KIAA0756 777 ESNPGD---VKGEGTRKN------NMEITWTPMnatsafgpnlryIV 814
gYr.................ytltgLkPgaepwteYefrVrAvngndaGe
+r++++++ ++++++++++y++ + Ye+rV+A+n+ G
KIAA0756 815 KWRrretreawnnvtvwgsrYVVGQTPVY----VPYEIRVQAEND--FGK 858
g<-*
g
KIAA0756 859 G 859
SM00060: domain 3 of 4, from 875 to 966: score 28.9, E = 0.00072
*->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv
+P+ ++v+ +st ++l+W++ +++ + +++
KIAA0756 875 RAAPTE---VKVRVMNST------AISLQWNRVysdtvqgqlreyRA 912
gYr..........................ytltgLkPgaepwteYefrVr
+Y+++++ ++ ++++++++ + ++++ + +++ L P+ ++Y+ +
KIAA0756 913 YYWressllknlwvsqkrqqasfpgdrlrGVVSRLFPY----SNYKLEMV 958
AvngndaGeg<-*
+vng +G g
KIAA0756 959 VVNG--RGDG 966
SM00060: domain 4 of 4, from 981 to 1065: score 36.7, E = 3.1e-06
*->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
P++P++ +rv+ + +++l+W++P+++++ +gY+ +
KIAA0756 981 PSAPRR---FRVRQPNLE------TINLEWDHPehpngiMIGYTlky 1018
......................ytltgLkPgaepwteYefrVrAvngnda
+ ++++++++ +++ +++++++t+ P ++Y+f+++A++ +
KIAA0756 1019 vafngtkvgkqivenfspnqtkFTVQRTDPV----SRYRFTLSARTQ--V 1062
Geg<-*
G+g
KIAA0756 1063 GSG 1065
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