hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12201749/chunk_1/iprscan-20080502-12201749.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0762 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06468.3.ls Spondin_N 544.7 8.9e-161 1 PF06468.3.fs Spondin_N 542.8 3.4e-160 1 PF00090.9.ls Thrombospondin type 1 domain 442.4 5.6e-130 6 PF00090.9.fs Thrombospondin type 1 domain 431.2 3.6e-129 6 PF02014.7.fs Reeler domain 181.7 1.6e-51 1 PF02014.7.ls Reeler domain 120.5 4.4e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02014.7.fs 1/1 1 90 [. 57 150 .] 181.7 1.6e-51 PF02014.7.ls 1/1 1 90 [. 1 150 [] 120.5 4.4e-33 PF06468.3.ls 1/1 91 332 .. 1 253 [] 544.7 8.9e-161 PF06468.3.fs 1/1 91 332 .. 1 253 [] 542.8 3.4e-160 PF00090.9.ls 1/6 363 411 .. 1 55 [] 62.1 1.7e-15 PF00090.9.fs 1/6 363 411 .. 1 55 [] 60.2 1.8e-17 PF00090.9.ls 2/6 422 471 .. 1 55 [] 74.8 2.5e-19 PF00090.9.fs 2/6 422 471 .. 1 55 [] 72.9 2.7e-21 PF00090.9.ls 3/6 479 527 .. 1 55 [] 81.3 2.8e-21 PF00090.9.fs 3/6 479 527 .. 1 55 [] 79.4 3e-23 PF00090.9.ls 4/6 535 582 .. 1 55 [] 90.6 4.5e-24 PF00090.9.fs 4/6 535 582 .. 1 55 [] 88.7 4.6e-26 PF00090.9.ls 5/6 589 637 .. 1 55 [] 69.8 8e-18 PF00090.9.fs 5/6 589 637 .. 1 55 [] 68.0 8.4e-20 PF00090.9.ls 6/6 675 724 .] 1 55 [] 63.9 5e-16 PF00090.9.fs 6/6 675 724 .] 1 55 [] 62.0 5.2e-18 Alignments of top-scoring domains: PF02014.7.fs: domain 1 of 1, from 1 to 90: score 181.7, E = 1.6e-51 *->gtSPeyFRGFlLtalkegregeseedpaGsssFqlideedtqfpted + +P+yFRGF+L+al e+reg++eed+aG +Fq+idee+tqf++ KIAA0762 1 AAPPSYFRGFTLIALRENREGDKEEDHAG--TFQIIDEEETQFMS-- 43 gCpvAVshasssrktrisvfWkAPpagsGCVvFrATvvqrkiIyFqd<-* +CpvAV++++++r+tri+vfW+APpag+GCV+++A++vq++iIyFqd KIAA0762 44 NCPVAVTESTPRRRTRIQVFWIAPPAGTGCVILKASIVQKRIIYFQD 90 PF02014.7.ls: domain 1 of 1, from 1 to 90: score 120.5, E = 4.4e-33 *->fCsrilpahgkgdksegsnefslkiegsptksmDisksyvPGetYrV KIAA0762 - ----------------------------------------------- - tiRGWRtqsgtSPeyFRGFlLtalkegregeseedpaGsssFqlideedt ++ P+yFRGF+L+al e+reg++eed+aG +Fq+idee+t KIAA0762 1 --------AAP-PSYFRGFTLIALRENREGDKEEDHAG--TFQIIDEEET 39 qfptedgCpvAVshasssrktrisvfWkAPpagsGCVvFrATvvqrkiIy qf++ +CpvAV++++++r+tri+vfW+APpag+GCV+++A++vq++iIy KIAA0762 40 QFMS--NCPVAVTESTPRRRTRIQVFWIAPPAGTGCVILKASIVQKRIIY 87 Fqd<-* Fqd KIAA0762 88 FQD 90 PF06468.3.ls: domain 1 of 1, from 91 to 332: score 544.7, E = 8.9e-161 *->dgsLTkrrlCeekpd..alasppatptaplttCcAcdeAkYrlvFeG +gsLTk+ lCe++ + + ++++p +CcAc++AkYrl+F+G KIAA0762 91 EGSLTKK-LCEQDSTfdGVTDKPI------LDCCACGTAKYRLTFYG 130 kWSrnThPKDYPlfrpptqWskliGasHSsnYrLWeyGgyASeGmKefAE +WS++ThPKDYP r++++Ws++iG sHS+nY+LWeyGgyASeG+K++AE KIAA0762 131 NWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAE 178 wGstvkLekEirEkaqgqevRsVikafglpaiwqPPngtGttsaefrVdp Gs+vk+e+Ei ++q++ev +Vika++++++wqP n+++++saef+Vd+ KIAA0762 179 LGSPVKMEEEI--RQQSDEVLTVIKAKAQWPAWQPLNVRAAPSAEFSVDR 226 rHhlvSLatkigPSPDWfVGVdgLeLClgdCtWkeevtfdLyPwDAGTDS ++hl+S++t++gPSPDW+VG+++++LC+++C+W+++v++dL+PwDAGTDS KIAA0762 227 TRHLMSFLTMMGPSPDWNVGLSAEDLCTKECGWVQKVVQDLIPWDAGTDS 276 GfTysSPNePTiPqevIrrITSsyPshPasPFYyprgkplpPlAtvyltR G+Ty+SPN+PTiPqe+Ir++TS + hP+sPFY+p+g++++++A+v+++R KIAA0762 277 GVTYESPNKPTIPQEKIRPLTSLD--HPQSPFYDPEGGSITQVARVVIER 324 kkryerec<-* ++r++++c KIAA0762 325 IARKGEQC 332 PF06468.3.fs: domain 1 of 1, from 91 to 332: score 542.8, E = 3.4e-160 *->dgsLTkrrlCeekpd..alasppatptaplttCcAcdeAkYrlvFeG +gsLTk+ lCe++ + + ++++p +CcAc++AkYrl+F+G KIAA0762 91 EGSLTKK-LCEQDSTfdGVTDKPI------LDCCACGTAKYRLTFYG 130 kWSrnThPKDYPlfrpptqWskliGasHSsnYrLWeyGgyASeGmKefAE +WS++ThPKDYP r++++Ws++iG sHS+nY+LWeyGgyASeG+K++AE KIAA0762 131 NWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAE 178 wGstvkLekEirEkaqgqevRsVikafglpaiwqPPngtGttsaefrVdp Gs+vk+e+Ei ++q++ev +Vika++++++wqP n+++++saef+Vd+ KIAA0762 179 LGSPVKMEEEI--RQQSDEVLTVIKAKAQWPAWQPLNVRAAPSAEFSVDR 226 rHhlvSLatkigPSPDWfVGVdgLeLClgdCtWkeevtfdLyPwDAGTDS ++hl+S++t++gPSPDW+VG+++++LC+++C+W+++v++dL+PwDAGTDS KIAA0762 227 TRHLMSFLTMMGPSPDWNVGLSAEDLCTKECGWVQKVVQDLIPWDAGTDS 276 GfTysSPNePTiPqevIrrITSsyPshPasPFYyprgkplpPlAtvyltR G+Ty+SPN+PTiPqe+Ir++TS + hP+sPFY+p+g++++++A+v+++R KIAA0762 277 GVTYESPNKPTIPQEKIRPLTSLD--HPQSPFYDPEGGSITQVARVVIER 324 kkryerec<-* ++r++++c KIAA0762 325 IARKGEQC 332 PF00090.9.ls: domain 1 of 6, from 363 to 411: score 62.1, E = 1.7e-15 *->spWseWSpCSV.TCGkGirtRqRvcnspaPqkkggepCtgdvqelet s+Ws+WS+CS +TC kG r+RqR+ +++ + + pC++++ + KIAA0762 363 SNWSPWSACSSsTCDKGKRMRQRMLKAQL---DLSVPCPDTQD---F 403 eaCdmmdkC<-* ++C m + C KIAA0762 404 QPC-MGPGC 411 PF00090.9.fs: domain 1 of 6, from 363 to 411: score 60.2, E = 1.8e-17 *->spWseWSpCSV.TCGkGirtRqRvcnspaPqkkggepCtgdvqelet s+Ws+WS+CS +TC kG r+RqR+ +++ + + pC++++ + KIAA0762 363 SNWSPWSACSSsTCDKGKRMRQRMLKAQL---DLSVPCPDTQD---F 403 eaCdmmdkC<-* ++C m + C KIAA0762 404 QPC-MGPGC 411 PF00090.9.ls: domain 2 of 6, from 422 to 471: score 74.8, E = 2.5e-19 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+W +WSpCS +CG+G+r+R R+++ ++P ++g+ Ct++++e te KIAA0762 422 SEWITWSPCSISCGMGMRSRERYVK-QFP--EDGSVCTLPTEE--TE 463 aCdmmdkC<-* +C+ ++C KIAA0762 464 KCTVNEEC 471 PF00090.9.fs: domain 2 of 6, from 422 to 471: score 72.9, E = 2.7e-21 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+W +WSpCS +CG+G+r+R R+++ ++P ++g+ Ct++++e te KIAA0762 422 SEWITWSPCSISCGMGMRSRERYVK-QFP--EDGSVCTLPTEE--TE 463 aCdmmdkC<-* +C+ ++C KIAA0762 464 KCTVNEEC 471 PF00090.9.ls: domain 3 of 6, from 479 to 527: score 81.3, E = 2.8e-21 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete ++W+eW +CS TCG+G++ R+R+++++ P ++g++C+ ++ + e KIAA0762 479 TEWGEWDECSATCGMGMKKRHRMIKMN-P--ADGSMCKAETSQ--AE 520 aCdmmdkC<-* +C mm++C KIAA0762 521 KC-MMPEC 527 PF00090.9.fs: domain 3 of 6, from 479 to 527: score 79.4, E = 3e-23 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete ++W+eW +CS TCG+G++ R+R+++++ P ++g++C+ ++ + e KIAA0762 479 TEWGEWDECSATCGMGMKKRHRMIKMN-P--ADGSMCKAETSQ--AE 520 aCdmmdkC<-* +C mm++C KIAA0762 521 KC-MMPEC 527 PF00090.9.ls: domain 4 of 6, from 535 to 582: score 90.6, E = 4.5e-24 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete spWseWS+CSVTCGkG+rtRqR+ +s ++ ++C +d ++ +e KIAA0762 535 SPWSEWSDCSVTCGKGMRTRQRMLKSL----AELGDCNEDLEQ--VE 575 aCdmmdkC<-* +C m ++C KIAA0762 576 KC-MLPEC 582 PF00090.9.fs: domain 4 of 6, from 535 to 582: score 88.7, E = 4.6e-26 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete spWseWS+CSVTCGkG+rtRqR+ +s ++ ++C +d ++ +e KIAA0762 535 SPWSEWSDCSVTCGKGMRTRQRMLKSL----AELGDCNEDLEQ--VE 575 aCdmmdkC<-* +C m ++C KIAA0762 576 KC-MLPEC 582 PF00090.9.ls: domain 5 of 6, from 589 to 637: score 69.8, E = 8e-18 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete ++Ws+WS+C+++CGkG+ +R+R+++++ Pq +gg+pC+++vq+ + KIAA0762 589 TEWSQWSECNKSCGKGHVIRTRMIQME-PQ-FGGAPCPETVQR---K 630 aCdmmdkC<-* +C + +kC KIAA0762 631 KC-RIRKC 637 PF00090.9.fs: domain 5 of 6, from 589 to 637: score 68.0, E = 8.4e-20 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete ++Ws+WS+C+++CGkG+ +R+R+++++ Pq +gg+pC+++vq+ + KIAA0762 589 TEWSQWSECNKSCGKGHVIRTRMIQME-PQ-FGGAPCPETVQR---K 630 aCdmmdkC<-* +C + +kC KIAA0762 631 KC-RIRKC 637 PF00090.9.ls: domain 6 of 6, from 675 to 724: score 63.9, E = 5e-16 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqelet pW+ WS+C++ CG+Gi++R++++++++ k+++ +C+++++ + KIAA0762 675 RPWTAWSECTKLCGGGIQERYMTVKKRF--KsSQFTSCKDKKE---I 716 eaCdmmdkC<-* +aC ++++C KIAA0762 717 RAC-NVHPC 724 PF00090.9.fs: domain 6 of 6, from 675 to 724: score 62.0, E = 5.2e-18 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqelet pW+ WS+C++ CG+Gi++R++++++++ k+++ +C+++++ + KIAA0762 675 RPWTAWSECTKLCGGGIQERYMTVKKRF--KsSQFTSCKDKKE---I 716 eaCdmmdkC<-* +aC ++++C KIAA0762 717 RAC-NVHPC 724 //