hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12321590/chunk_1/iprscan-20080502-12321590.nocrc
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Query sequence: KIAA0769
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00018.18.ls SH3 domain                                     117.9    2.7e-32   2
PF00018.18.fs SH3 domain                                     114.3    3.3e-31   2
PF07653.7.fs Variant SH3 domain                              70.2    1.4e-19   2
PF07653.7.ls Variant SH3 domain                              73.8      5e-19   2
PF00611.13.fs Fes/CIP4 homology domain                        26.5    3.3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00611.13.fs   1/1      46   114 ..    31   107 .]    26.5  3.3e-07
PF00018.18.fs   1/2     478   532 ..     1    57 [.    46.8  5.1e-12
PF00018.18.ls   1/2     478   534 ..     1    59 []    48.5  2.2e-11
PF07653.7.ls   1/2     479   534 ..     1    69 []    31.2  3.4e-06
PF07653.7.fs   1/2     479   534 ..     1    69 []    29.4  8.1e-08
PF00018.18.fs   2/2     576   633 ..     1    59 []    67.5  1.1e-17
PF00018.18.ls   2/2     576   633 ..     1    59 []    69.4  1.1e-17
PF07653.7.ls   2/2     577   633 ..     1    69 []    42.6  1.2e-09
PF07653.7.fs   2/2     577   633 ..     1    69 []    40.8    4e-11

Alignments of top-scoring domains:
PF00611.13.fs: domain 1 of 1, from 46 to 114: score 26.5, E = 3.3e-07
                   *->kkFlreRakiEeeYAkkLqklskkyfnkkRkSdgsvskdsltekgpd
                      + F +++a+iE+eYA+ +qkl+++y+++         ++ +  + +d
    KIAA0769    46    RTFSQKKAAIEREYAQGMQKLASQYLKRD-------WPGVKADDRND 85   

                   slsslkkawnvllsetdqlsklHsqlseqL<-*
                   + s    +w+++l+ t q++++++ + e++   
    KIAA0769    86 YRSMY-PVWKSFLEGTMQVAQSRMNICENY    114  

PF00018.18.fs: domain 1 of 2, from 478 to 532: score 46.8, E = 5.1e-12
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       ++++ Y Y+a+++dEL++++ +v++v+e+ d  +W k+r+k   G+
    KIAA0769   478    LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV--GQ 522  

                   eGliPsNYVe<-*
                   +G++P  Y++   
    KIAA0769   523 VGYVPEKYLQ    532  

PF00018.18.ls: domain 1 of 2, from 478 to 534: score 48.5, E = 2.2e-11
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       ++++ Y Y+a+++dEL++++ +v++v+e+ d  +W k+r+k   G+
    KIAA0769   478    LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV--GQ 522  

                   eGliPsNYVepv<-*
                   +G++P  Y++     
    KIAA0769   523 VGYVPEKYLQFP    534  

PF07653.7.ls: domain 1 of 2, from 479 to 534: score 31.2, E = 3.4e-06
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                       ++++ +y+a + ++e      L++++++v++Vi    + d ++w +
    KIAA0769   479    TCKVVYSYKA-SQPDE------LTIEEHEVLEVI---EDGDMEDWVK 515  

                   geslggGrrrRGlvPssaveel<-*
                   +++ + G++  G+vP ++++     
    KIAA0769   516 ARN-KVGQV--GYVPEKYLQFP    534  

PF07653.7.fs: domain 1 of 2, from 479 to 534: score 29.4, E = 8.1e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                       ++++ +y+a + ++e      L++++++v++Vi    + d ++w +
    KIAA0769   479    TCKVVYSYKA-SQPDE------LTIEEHEVLEVI---EDGDMEDWVK 515  

                   geslggGrrrRGlvPssaveel<-*
                   +++ + G++  G+vP ++++     
    KIAA0769   516 ARN-KVGQV--GYVPEKYLQFP    534  

PF00018.18.fs: domain 2 of 2, from 576 to 633: score 67.5, E = 1.1e-17
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd..pgWWkgrlkgtg
                       +v+ALYDYe++++dELsF +G +i +l+k++ +++g W+g+ +   
    KIAA0769   576    CFVKALYDYEGQTDDELSFPEGAIIRILNKENQddDGFWEGEFN--- 619  

                   GkeGliPsNYVepv<-*
                   G+ G +Ps  Ve+    
    KIAA0769   620 GRIGVFPSVLVEEL    633  

PF00018.18.ls: domain 2 of 2, from 576 to 633: score 69.4, E = 1.1e-17
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd..pgWWkgrlkgtg
                       +v+ALYDYe++++dELsF +G +i +l+k++ +++g W+g+ +   
    KIAA0769   576    CFVKALYDYEGQTDDELSFPEGAIIRILNKENQddDGFWEGEFN--- 619  

                   GkeGliPsNYVepv<-*
                   G+ G +Ps  Ve+    
    KIAA0769   620 GRIGVFPSVLVEEL    633  

PF07653.7.ls: domain 2 of 2, from 577 to 633: score 42.6, E = 1.2e-09
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVi.dvggskdddgww
                      +++a+ dy++ +  +e      Ls+ +G +++++++   ++dddg+w
    KIAA0769   577    FVKALYDYEG-QTDDE------LSFPEGAIIRILnK--ENQDDDGFW 614  

                   egeslggGrrrRGlvPssaveel<-*
                   ege   +Gr   G++Ps +veel   
    KIAA0769   615 EGEF--NGRI--GVFPSVLVEEL    633  

PF07653.7.fs: domain 2 of 2, from 577 to 633: score 40.8, E = 4e-11
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVi.dvggskdddgww
                      +++a+ dy++ +  +e      Ls+ +G +++++++   ++dddg+w
    KIAA0769   577    FVKALYDYEG-QTDDE------LSFPEGAIIRILnK--ENQDDDGFW 614  

                   egeslggGrrrRGlvPssaveel<-*
                   ege   +Gr   G++Ps +veel   
    KIAA0769   615 EGEF--NGRI--GVFPSVLVEEL    633  

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