hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12335881/chunk_1/iprscan-20080502-12335881.nocrc
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Query sequence: KIAA0770
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00780.12.ls CNH domain                                      25.9    2.9e-07   1
PF00780.12.fs CNH domain                                      25.0    7.4e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00780.12.ls   1/1      53   321 ..     1   363 []    25.9  2.9e-07
PF00780.12.fs   2/2     268   321 ..   302   363 .]    13.6   0.0012

Alignments of top-scoring domains:
PF00780.12.ls: domain 1 of 1, from 53 to 321: score 25.9, E = 2.9e-07
                   *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhda.......flgklvk
                       + + +   ++ +LLvGT +G  +l+r ++ d + ++ +  l+k  k
    KIAA0770    53    PLQIDCLAAWEEWLLVGTKQGHLLLYRIRK-DVgcnrfevTLEKSNK 98   

                   iigrrsvtqlevieelnlLllLseGKkrhLylhpLsaLetekkdtaqgss
                    ++++ ++q+ v+ ++++L++L    ++++y+h+L +             
    KIAA0770    99 NFSKK-IQQIHVVSQFKILVSLL---ENNIYVHDLLTF------------ 132  

                   kilrlpektlarrfavskKipetkghCklccvgfiaegycggtkFLcvvA
                              ++++ + K +  +  C l+ +++ +e + ++      vA
    KIAA0770   133 ---------QQITTVSKAKGASLFT-CDLQHTETGEEVLRMC------VA 166  

                   lksddlstsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpe
                   +k+     ++ ly W                   +++ ++ +  ++ vp 
    KIAA0770   167 VKK-----KLQLYFW-------------------KDREFHELQGDFSVPD 192  

                   pvqsieflkpslcvGcskgfeillvlfgssgfhsldleGqseaaldlllP
                    + s++   +s+cvG++  ++  +v++             +++  +l+  
    KIAA0770   193 VPKSMAWCENSICVGFKRDYYLIRVDG-------------KGSIKELFP- 228  

                   sndlslefakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqG
                                    + +  e+++a+  d+  +++  +++ v  N++G
    KIAA0770   229 -----------------TGKQLEPLVAPLADGK-VAVGQDDLTVVLNEEG 260  

                   rrsrkkkdiselmWegaPesfayslypyllafhdngieIrsletgeltqe
                     ++k      l+W   P +  +  +py++a+ +  +eIr +e + l   
    KIAA0770   261 ICTQKC----ALNWTDIPVAMEHQ-PPYIIAVLPRYVEIRTFEPRLL--- 302  

                   ladrvqtillnkirllvslrsls<-*
                       vq+i l++ r+  s++s +   
    KIAA0770   303 ----VQSIELQRPRFITSGGSNI    321  

PF00780.12.fs: domain 2 of 2, from 268 to 321: score 13.6, E = 0.0012
                   *->lmWegaPesfayslypyllafhdngieIrsletgeltqeladrvqti
                      l+W   P +  +  +py++a+ +  +eIr +e + l       vq+i
    KIAA0770   268    LNWTDIPVAMEHQ-PPYIIAVLPRYVEIRTFEPRLL-------VQSI 306  

                   llnkirllvslrsls<-*
                    l++ r+  s++s +   
    KIAA0770   307 ELQRPRFITSGGSNI    321  

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