hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12335881/chunk_1/iprscan-20080502-12335881.nocrc
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Query sequence: KIAA0770
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00036                                                 -19.0     0.0016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00036    1/1      48   327 ..     1   375 []   -19.0   0.0016

Alignments of top-scoring domains:
SM00036: domain 1 of 1, from 48 to 327: score -19.0, E = 0.0016
                   *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkd.....heg
                         k    i+c + W  +LLvgT +G  +l++ r    d + +++e+
    KIAA0770    48    ILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRK---DvgcnrFEV 91   

                   tleklis..rrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltq
                   tlek +++ ++ ++qi v + +++L++++ ++  +y+h+L +        
    KIAA0770    92 TLEKSNKnfSKKIQQIHVVSQFKILVSLLENN--IYVHDLLTF------- 132  

                   gntpiikdalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilfl
                             ++ ++v + ++   ++      c l +    g+   +l  
    KIAA0770   133 ----------QQITTVSKAKGA-SLFT-----CDLQHT-ETGEE--VLRM 163  

                   caalqssVvllaqwynplkkfklvksSNNiLNNEledikkflkklivplp
                   c+a++++ +l+  w + + +++  +                       ++
    KIAA0770   164 CVAVKKKLQLY-FWKDREFHELQGD-----------------------FS 189  

                   lfvelvsssfelpkvciGsdkPVGGdaggdvvqfhqdphlNslkfkeslv
                   ++  + s    ++++c+G +       +++ + ++               
    KIAA0770   190 VPDVPKSMAWCENSICVGFKR------DYYLIRVD--------------- 218  

                   skedlslpfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvf
                      + s+  +   ++  ++  +p+ v ++          +++  d+  v 
    KIAA0770   219 --GKGSIKELFPTGK--QL--EPL-VAPLAD------GKVAVGQDDLTVV 255  

                   VNlqGlevrrsrkpiltwefmpesfayvepyllafhsngieIrsiktgel
                    N++G     + k  l w+  p +     py++a+    +eIr ++ + l
    KIAA0770   256 LNEEG---ICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLL 302  

                   NlqeladrsiikarkiRlLgsCeisdrkIllsssp<-*
                    +q++       ++++R++ s     + I++  s+   
    KIAA0770   303 -VQSIE------LQRPRFITS---GGSNIIYVASN    327  

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