hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12574513/chunk_1/iprscan-20080502-12574513.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0784 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 49.6 1e-11 6 PF00096.16.fs Zinc finger, C2H2 type 37.8 3.4e-08 6 PF00046.19.ls Homeobox domain 7.2 0.00081 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 6/6 483 506 .. 1 24 [] 18.9 0.017 PF00046.19.ls 1/1 735 784 .. 1 57 [] 7.2 0.00081 Alignments of top-scoring domains: PF00096.16.ls: domain 6 of 6, from 483 to 506: score 18.9, E = 0.017 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +Cp +C +F++ + + +H+r+ H KIAA0784 483 LSCP-YCRSTFNDVEKMAAHMRMvH 506 PF00046.19.ls: domain 1 of 1, from 735 to 784: score 7.2, E = 0.00081 *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW R L k+F+k++YP+r e+e+LA++L L ++ + KIAA0784 735 YEAR-------KSFLTKYFNKQPYPTRREIEKLAASLWLWKSDIASH 774 FQNRRaKwKk<-* F N+R K+ + KIAA0784 775 FSNKRKKCVR 784 //