hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13074905/chunk_1/iprscan-20080502-13074905.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0790 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07647.7.fs SAM domain (Sterile alpha motif) 85.0 2.8e-24 2 PF07647.7.ls SAM domain (Sterile alpha motif) 88.9 1.4e-23 2 PF00536.20.fs SAM domain (Sterile alpha motif) 55.0 1.4e-15 2 PF00536.20.ls SAM domain (Sterile alpha motif) 58.9 1.5e-14 2 PF07653.7.fs Variant SH3 domain 28.0 2e-07 1 PF07653.7.ls Variant SH3 domain 29.8 8.8e-06 1 PF00018.18.ls SH3 domain -2.3 0.033 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/1 629 685 .. 1 59 [] -2.3 0.033 PF07653.7.fs 1/1 630 685 .. 1 69 [] 28.0 2e-07 PF07653.7.ls 1/1 630 685 .. 1 69 [] 29.8 8.8e-06 PF07647.7.ls 1/2 702 769 .. 1 72 [] 41.7 2.4e-09 PF00536.20.fs 1/2 703 767 .. 1 65 [] 33.7 2.7e-09 PF00536.20.ls 1/2 703 767 .. 1 65 [] 35.7 1.5e-07 PF07647.7.fs 1/2 707 769 .. 6 72 .] 39.8 5.3e-11 PF07647.7.fs 2/2 1246 1313 .. 1 72 [] 45.3 1.3e-12 PF07647.7.ls 2/2 1246 1313 .. 1 72 [] 47.2 5e-11 PF00536.20.ls 2/2 1247 1311 .. 1 65 [] 23.2 0.00088 PF00536.20.fs 2/2 1252 1311 .. 6 65 .] 21.3 1.3e-05 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 1, from 629 to 685: score -2.3, E = 0.033 *->kkvvALYDYeare..sdELsFkkGDvitvleksddpgWWkgrlkgtg ++++ D++++ + d L +kkGD+i +++k + g W g l+ KIAA0790 629 GRARVHTDFTPSPydTDSLKLKKGDIIDIISKPPM-GTWMGLLN--- 671 GkeGliPsNYVepv<-* +k+G + YV+ KIAA0790 672 NKVGTFKFIYVDVL 685 PF07653.7.fs: domain 1 of 1, from 630 to 685: score 28.0, E = 2e-07 *->ygraiedyva.AtdknenleeeeLslkkGdvvkVidvggskdddgw. ++r++ d++++++d++ L lkkGd++ +i +++ ++ KIAA0790 630 RARVHTDFTPsPYDTDS------LKLKKGDIIDII-----SKPPMGt 665 wegeslggGrrrRGlvPssaveel<-* w g + ++++ G +++ +v +l KIAA0790 666 WMGLL--NNKV--GTFKFIYVDVL 685 PF07653.7.ls: domain 1 of 1, from 630 to 685: score 29.8, E = 8.8e-06 *->ygraiedyva.AtdknenleeeeLslkkGdvvkVidvggskdddgw. ++r++ d++++++d++ L lkkGd++ +i +++ ++ KIAA0790 630 RARVHTDFTPsPYDTDS------LKLKKGDIIDII-----SKPPMGt 665 wegeslggGrrrRGlvPssaveel<-* w g + ++++ G +++ +v +l KIAA0790 666 WMGLL--NNKV--GTFKFIYVDVL 685 PF07647.7.ls: domain 1 of 2, from 702 to 769: score 41.7, E = 2.4e-09 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + ++sv + L++i+l +++ + F+ +g++ l+ + l+eedL KIAA0790 702 GRPPQPKSVEDLLDRINL-KEHMPTFLFNGYEDLDTF-KLLEEEDL- 745 klalGitsvghRkkilkkiqelkqq<-* +l+i ++ hR +l++++ l++ KIAA0790 746 D-ELNIRDPEHRAVLLTAVELLQEY 769 PF00536.20.fs: domain 1 of 2, from 703 to 767: score 33.7, E = 2.7e-09 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + sV + L+ i l++++ +Fl +gy d+dt+ +l eeDL +l+ KIAA0790 703 RPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDELN 749 vtllGHrkKIlssIqgLk<-* ++ + Hr +l +++ L KIAA0790 750 IRDPEHRAVLLTAVELLQ 767 PF00536.20.ls: domain 1 of 2, from 703 to 767: score 35.7, E = 1.5e-07 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + sV + L+ i l++++ +Fl +gy d+dt+ +l eeDL +l+ KIAA0790 703 RPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDELN 749 vtllGHrkKIlssIqgLk<-* ++ + Hr +l +++ L KIAA0790 750 IRDPEHRAVLLTAVELLQ 767 PF07647.7.fs: domain 1 of 2, from 707 to 769: score 39.8, E = 5.3e-11 *->lesvaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalG ++sv + L++i+l +++ + F+ +g++ l+ + l+eedL +l+ KIAA0790 707 PKSVEDLLDRINL-KEHMPTFLFNGYEDLDTF-KLLEEEDL-D-ELN 749 itsvghRkkilkkiqelkqq<-* i ++ hR +l++++ l++ KIAA0790 750 IRDPEHRAVLLTAVELLQEY 769 PF07647.7.fs: domain 2 of 2, from 1246 to 1313: score 45.3, E = 1.3e-12 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ + +sv++WL sigl + Y+ +s +g+++l+++ + l++ L KIAA0790 1246 VSPGCISSVSDWLISIGL-PMYAGTLSTAGFSTLSQV-PSLSHTCL- 1289 klalGitsvghRkkilkkiqelkqq<-* + + Git h +k+l+++ +k + KIAA0790 1290 Q-EAGITEERHIRKLLSAARLFKLP 1313 PF07647.7.ls: domain 2 of 2, from 1246 to 1313: score 47.2, E = 5e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ + +sv++WL sigl + Y+ +s +g+++l+++ + l++ L KIAA0790 1246 VSPGCISSVSDWLISIGL-PMYAGTLSTAGFSTLSQV-PSLSHTCL- 1289 klalGitsvghRkkilkkiqelkqq<-* + + Git h +k+l+++ +k + KIAA0790 1290 Q-EAGITEERHIRKLLSAARLFKLP 1313 PF00536.20.ls: domain 2 of 2, from 1247 to 1311: score 23.2, E = 0.00088 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + +sV++WL sigl+ Y+ + ag++++++++ l+ L++ G KIAA0790 1247 SPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAG 1293 vtllGHrkKIlssIqgLk<-* +t H K+ls+ + +k KIAA0790 1294 ITEERHIRKLLSAARLFK 1311 PF00536.20.fs: domain 2 of 2, from 1252 to 1311: score 21.3, E = 1.3e-05 *->esVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlGvtllG +sV++WL sigl+ Y+ + ag++++++++ l+ L++ G+t KIAA0790 1252 SSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEER 1298 HrkKIlssIqgLk<-* H K+ls+ + +k KIAA0790 1299 HIRKLLSAARLFK 1311 //