hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13074905/chunk_1/iprscan-20080502-13074905.nocrc
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Query sequence: KIAA0790
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF07647.7.fs SAM domain (Sterile alpha motif) 85.0 2.8e-24 2
PF07647.7.ls SAM domain (Sterile alpha motif) 88.9 1.4e-23 2
PF00536.20.fs SAM domain (Sterile alpha motif) 55.0 1.4e-15 2
PF00536.20.ls SAM domain (Sterile alpha motif) 58.9 1.5e-14 2
PF07653.7.fs Variant SH3 domain 28.0 2e-07 1
PF07653.7.ls Variant SH3 domain 29.8 8.8e-06 1
PF00018.18.ls SH3 domain -2.3 0.033 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00018.18.ls 1/1 629 685 .. 1 59 [] -2.3 0.033
PF07653.7.fs 1/1 630 685 .. 1 69 [] 28.0 2e-07
PF07653.7.ls 1/1 630 685 .. 1 69 [] 29.8 8.8e-06
PF07647.7.ls 1/2 702 769 .. 1 72 [] 41.7 2.4e-09
PF00536.20.fs 1/2 703 767 .. 1 65 [] 33.7 2.7e-09
PF00536.20.ls 1/2 703 767 .. 1 65 [] 35.7 1.5e-07
PF07647.7.fs 1/2 707 769 .. 6 72 .] 39.8 5.3e-11
PF07647.7.fs 2/2 1246 1313 .. 1 72 [] 45.3 1.3e-12
PF07647.7.ls 2/2 1246 1313 .. 1 72 [] 47.2 5e-11
PF00536.20.ls 2/2 1247 1311 .. 1 65 [] 23.2 0.00088
PF00536.20.fs 2/2 1252 1311 .. 6 65 .] 21.3 1.3e-05
Alignments of top-scoring domains:
PF00018.18.ls: domain 1 of 1, from 629 to 685: score -2.3, E = 0.033
*->kkvvALYDYeare..sdELsFkkGDvitvleksddpgWWkgrlkgtg
++++ D++++ + d L +kkGD+i +++k + g W g l+
KIAA0790 629 GRARVHTDFTPSPydTDSLKLKKGDIIDIISKPPM-GTWMGLLN--- 671
GkeGliPsNYVepv<-*
+k+G + YV+
KIAA0790 672 NKVGTFKFIYVDVL 685
PF07653.7.fs: domain 1 of 1, from 630 to 685: score 28.0, E = 2e-07
*->ygraiedyva.AtdknenleeeeLslkkGdvvkVidvggskdddgw.
++r++ d++++++d++ L lkkGd++ +i +++ ++
KIAA0790 630 RARVHTDFTPsPYDTDS------LKLKKGDIIDII-----SKPPMGt 665
wegeslggGrrrRGlvPssaveel<-*
w g + ++++ G +++ +v +l
KIAA0790 666 WMGLL--NNKV--GTFKFIYVDVL 685
PF07653.7.ls: domain 1 of 1, from 630 to 685: score 29.8, E = 8.8e-06
*->ygraiedyva.AtdknenleeeeLslkkGdvvkVidvggskdddgw.
++r++ d++++++d++ L lkkGd++ +i +++ ++
KIAA0790 630 RARVHTDFTPsPYDTDS------LKLKKGDIIDII-----SKPPMGt 665
wegeslggGrrrRGlvPssaveel<-*
w g + ++++ G +++ +v +l
KIAA0790 666 WMGLL--NNKV--GTFKFIYVDVL 685
PF07647.7.ls: domain 1 of 2, from 702 to 769: score 41.7, E = 2.4e-09
*->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
+ ++sv + L++i+l +++ + F+ +g++ l+ + l+eedL
KIAA0790 702 GRPPQPKSVEDLLDRINL-KEHMPTFLFNGYEDLDTF-KLLEEEDL- 745
klalGitsvghRkkilkkiqelkqq<-*
+l+i ++ hR +l++++ l++
KIAA0790 746 D-ELNIRDPEHRAVLLTAVELLQEY 769
PF00536.20.fs: domain 1 of 2, from 703 to 767: score 33.7, E = 2.7e-09
*->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
+ + sV + L+ i l++++ +Fl +gy d+dt+ +l eeDL +l+
KIAA0790 703 RPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDELN 749
vtllGHrkKIlssIqgLk<-*
++ + Hr +l +++ L
KIAA0790 750 IRDPEHRAVLLTAVELLQ 767
PF00536.20.ls: domain 1 of 2, from 703 to 767: score 35.7, E = 1.5e-07
*->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
+ + sV + L+ i l++++ +Fl +gy d+dt+ +l eeDL +l+
KIAA0790 703 RPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDELN 749
vtllGHrkKIlssIqgLk<-*
++ + Hr +l +++ L
KIAA0790 750 IRDPEHRAVLLTAVELLQ 767
PF07647.7.fs: domain 1 of 2, from 707 to 769: score 39.8, E = 5.3e-11
*->lesvaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalG
++sv + L++i+l +++ + F+ +g++ l+ + l+eedL +l+
KIAA0790 707 PKSVEDLLDRINL-KEHMPTFLFNGYEDLDTF-KLLEEEDL-D-ELN 749
itsvghRkkilkkiqelkqq<-*
i ++ hR +l++++ l++
KIAA0790 750 IRDPEHRAVLLTAVELLQEY 769
PF07647.7.fs: domain 2 of 2, from 1246 to 1313: score 45.3, E = 1.3e-12
*->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
v+ + +sv++WL sigl + Y+ +s +g+++l+++ + l++ L
KIAA0790 1246 VSPGCISSVSDWLISIGL-PMYAGTLSTAGFSTLSQV-PSLSHTCL- 1289
klalGitsvghRkkilkkiqelkqq<-*
+ + Git h +k+l+++ +k +
KIAA0790 1290 Q-EAGITEERHIRKLLSAARLFKLP 1313
PF07647.7.ls: domain 2 of 2, from 1246 to 1313: score 47.2, E = 5e-11
*->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
v+ + +sv++WL sigl + Y+ +s +g+++l+++ + l++ L
KIAA0790 1246 VSPGCISSVSDWLISIGL-PMYAGTLSTAGFSTLSQV-PSLSHTCL- 1289
klalGitsvghRkkilkkiqelkqq<-*
+ + Git h +k+l+++ +k +
KIAA0790 1290 Q-EAGITEERHIRKLLSAARLFKLP 1313
PF00536.20.ls: domain 2 of 2, from 1247 to 1311: score 23.2, E = 0.00088
*->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
+ +sV++WL sigl+ Y+ + ag++++++++ l+ L++ G
KIAA0790 1247 SPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAG 1293
vtllGHrkKIlssIqgLk<-*
+t H K+ls+ + +k
KIAA0790 1294 ITEERHIRKLLSAARLFK 1311
PF00536.20.fs: domain 2 of 2, from 1252 to 1311: score 21.3, E = 1.3e-05
*->esVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlGvtllG
+sV++WL sigl+ Y+ + ag++++++++ l+ L++ G+t
KIAA0790 1252 SSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEER 1298
HrkKIlssIqgLk<-*
H K+ls+ + +k
KIAA0790 1299 HIRKLLSAARLFK 1311
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