hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13161837/chunk_1/iprscan-20080502-13161837.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0795 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00612 362.4 2.8e-104 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00612 1/6 180 227 .. 1 55 [] 66.1 4.5e-15 SM00612 2/6 228 274 .. 1 55 [] 73.6 2.4e-17 SM00612 3/6 275 321 .. 1 55 [] 76.0 4.7e-18 SM00612 4/6 322 368 .. 1 55 [] 54.6 1.3e-11 SM00612 5/6 369 415 .. 1 55 [] 33.4 3.1e-05 SM00612 6/6 416 462 .. 1 55 [] 58.7 7.5e-13 Alignments of top-scoring domains: SM00612: domain 1 of 6, from 180 to 227: score 66.1, E = 4.5e-15 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg +iY+vGG + + g++l+ vEv+Dp n W+++ +M+t+Rs+ KIAA0795 180 LIYAVGGLNSA-------GDSLNVVEVFDPIANCWERCRPMTTARSR 219 agvaving<-* +gvav+ng KIAA0795 220 VGVAVVNG 227 SM00612: domain 2 of 6, from 228 to 274: score 73.6, E = 2.4e-17 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++Y++GG+dg + rl++vE Y+pet++W++v sM+++Rs KIAA0795 228 LLYAIGGYDG--------QLRLSTVEAYNPETDTWTRVGSMNSKRSA 266 agvaving<-* +g +v++g KIAA0795 267 MGTVVLDG 274 SM00612: domain 3 of 6, from 275 to 321: score 76.0, E = 4.7e-18 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg +iYv+GG+dg +++l+svE Y+pet+kW++v+sM++ Rs KIAA0795 275 QIYVCGGYDG--------NSSLSSVETYSPETDKWTVVTSMSSNRSA 313 agvaving<-* agv+v++g KIAA0795 314 AGVTVFEG 321 SM00612: domain 4 of 6, from 322 to 368: score 54.6, E = 1.3e-11 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg +iYv GG+dg q+++svE Y+++t +W+p + M ++R++ KIAA0795 322 RIYVSGGHDGL--------QIFSSVEHYNHHTATWHPAAGMLNKRCR 360 agvaving<-* +g+a+++ KIAA0795 361 HGAASLGS 368 SM00612: domain 5 of 6, from 369 to 415: score 33.4, E = 3.1e-05 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg k +v+GG+dg + +l+ +E+Y+ ++W + +M+t+Rs+ KIAA0795 369 KMFVCGGYDG--------SGFLSIAEMYSSVADQWCLIVPMHTRRSR 407 agvaving<-* +++++ g KIAA0795 408 VSLVASCG 415 SM00612: domain 6 of 6, from 416 to 462: score 58.7, E = 7.5e-13 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++Y+vGG+dg ++ l+svE+YDpet+ W+ +++M + g KIAA0795 416 RLYAVGGYDG--------QSNLSSVEMYDPETDCWTFMAPMACHEGG 454 agvaving<-* +gv+ i KIAA0795 455 VGVGCIPL 462 //