hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13250842/chunk_1/iprscan-20080502-13250842.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0800 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08513.1.fs LisH 19.4 0.00015 1 PF08513.1.ls LisH 21.4 0.0029 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08513.1.fs 1/1 862 888 .. 1 27 [] 19.4 0.00015 PF08513.1.ls 1/1 862 888 .. 1 27 [] 21.4 0.0029 Alignments of top-scoring domains: PF08513.1.fs: domain 1 of 1, from 862 to 888: score 19.4, E = 0.00015 *->eeLNrLIydYLvknGyketAeaFrkEa<-* +eL+ LI ++L+ +G+ etA + kEa KIAA0800 862 KELLLLIRNHLISKGLGETATVLTKEA 888 PF08513.1.ls: domain 1 of 1, from 862 to 888: score 21.4, E = 0.0029 *->eeLNrLIydYLvknGyketAeaFrkEa<-* +eL+ LI ++L+ +G+ etA + kEa KIAA0800 862 KELLLLIRNHLISKGLGETATVLTKEA 888 //