hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13265190/chunk_1/iprscan-20080502-13265190.nocrc
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Query sequence: KIAA0801
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                       256.8    4.2e-74   1
PF00270.19.fs DEAD/DEAH box helicase                       254.9    1.5e-73   1
PF00271.21.fs Helicase conserved C-terminal domain         109.9    1.8e-31   1
PF00271.21.ls Helicase conserved C-terminal domain         111.9    1.7e-30   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1     422   596 ..     1   213 []   254.9  1.5e-73
PF00270.19.ls   1/1     422   596 ..     1   213 []   256.8  4.2e-74
PF00271.21.fs   1/1     664   740 ..     1    76 []   109.9  1.8e-31
PF00271.21.ls   1/1     664   740 ..     1    76 []   111.9  1.7e-30

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 422 to 596: score 254.9, E = 1.5e-73
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      tpiQ +aipai++GrD++++A+TGSGKT afllP++ ++++++    
    KIAA0801   422    TPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDqR---- 464  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                       ++++++gp a++++PTreLa+Qi +e+kk+ k         lgl+v
    KIAA0801   465 ----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT--------LGLRV 502  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   +++yGG+ i+eq+ +l  +  +g    + I+v+TPgr +d+l        
    KIAA0801   503 VCVYGGTGISEQIAEL--K--RG----AEIIVCTPGRMIDML----AA-N 539  

                RF x xxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   a.sld.lknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdl
                   ++++ +l+++ ++VlDEA+r++dm Gf++++ +i+ +++ p+        
    KIAA0801   540 SgRVTnLRRVTYVVLDEADRMFDM-GFEPQVMRIVDNVR-PD-------- 579  

                RF xxxxxxxxxxxxxxxxxxx   
                   pnrqtllfSATlprnvedl<-*
                     rqt++fSAT+pr  e l   
    KIAA0801   580 --RQTVMFSATFPRAMEAL    596  

PF00270.19.ls: domain 1 of 1, from 422 to 596: score 256.8, E = 4.2e-74
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      tpiQ +aipai++GrD++++A+TGSGKT afllP++ ++++++    
    KIAA0801   422    TPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDqR---- 464  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                       ++++++gp a++++PTreLa+Qi +e+kk+ k         lgl+v
    KIAA0801   465 ----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT--------LGLRV 502  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   +++yGG+ i+eq+ +l  +  +g    + I+v+TPgr +d+l        
    KIAA0801   503 VCVYGGTGISEQIAEL--K--RG----AEIIVCTPGRMIDML----AA-N 539  

                RF x xxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   a.sld.lknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdl
                   ++++ +l+++ ++VlDEA+r++dm Gf++++ +i+ +++ p+        
    KIAA0801   540 SgRVTnLRRVTYVVLDEADRMFDM-GFEPQVMRIVDNVR-PD-------- 579  

                RF xxxxxxxxxxxxxxxxxxx   
                   pnrqtllfSATlprnvedl<-*
                     rqt++fSAT+pr  e l   
    KIAA0801   580 --RQTVMFSATFPRAMEAL    596  

PF00271.21.fs: domain 1 of 1, from 664 to 740: score 109.9, E = 1.8e-31
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                       l +  +++ +lhGg++q +R+ i+++F+ng +k+LvaT+va+rG+D
    KIAA0801   664    DLmRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 710  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ++++ lV+ny +p  +e+y++R+GR+GRaG   
    KIAA0801   711 VKHLILVVNYSCPNHYEDYVHRAGRTGRAG    740  

PF00271.21.ls: domain 1 of 1, from 664 to 740: score 111.9, E = 1.7e-30
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                       l +  +++ +lhGg++q +R+ i+++F+ng +k+LvaT+va+rG+D
    KIAA0801   664    DLmRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 710  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ++++ lV+ny +p  +e+y++R+GR+GRaG   
    KIAA0801   711 VKHLILVVNYSCPNHYEDYVHRAGRTGRAG    740  

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