hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13265190/chunk_1/iprscan-20080502-13265190.nocrc
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Query sequence: KIAA0801
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 237.8    9.1e-67   1
SM00490                                                 107.3    1.7e-27   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     417   622 ..     1   219 []   237.8  9.1e-67
SM00490      1/1     659   740 ..     1    86 []   107.3  1.7e-27

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 417 to 622: score 237.8, E = 9.1e-67
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      g++k++p+Q +aip++++grd+i++a+TGsGKT+afllp++++++ +
    KIAA0801   417    GYeKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ 463  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   + l+  +g gp +++++PtreLa Q+ +e+kk+ + lg      l+vv++
    KIAA0801   464 RSLE--EGEGPIAVIMTPTRELALQITKECKKFSKTLG------LRVVCV 505  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkg..lsl.nldl
                   ygG+ +    eq+++lk+g+  i+v+Tpgr +d+l  ++g+  +l+++ +
    KIAA0801   506 YGGtGI---SEQIAELKRGA-EIIVCTPGRMIDMLaANSGrvTNLrRVTY 551  

                   vilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eien
                   v+lDEa+r+ dm      gf++q+++++  ++++rq++++SAT+p+++e 
    KIAA0801   552 VVLDEADRMFDM------GFEPQVMrIVDNVRPDRQTVMFSATFPrAMEA 595  

                   llklflnlpelfpnpvfisvgf...tlepieqf<-*
                   l++++l+      +p+++ vg ++ ++ ++eq    
    KIAA0801   596 LARRILS------KPIEVQVGGrsvVCSDVEQQ    622  

SM00490: domain 1 of 1, from 659 to 740: score 107.3, E = 1.7e-27
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      d l + L ++     +++++lHGg++q +R+ i+++F++g +k Lva
    KIAA0801   659    DGLLKDLMRA----SYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 701  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   T+va+rGlD++++ lV+ny++p  +++y++R+GR+GRaG   
    KIAA0801   702 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAG    740  

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