# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh07536.fasta.huge -Q ../query/KIAA0802.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0802, 1578 aa vs ./tmplib.23663 library 1985927 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.0999+/-0.00826; mu= -0.7025+/- 0.556 mean_var=296.5039+/-70.835, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.074483 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0889 ( 535 res) hk08008 ( 535) 466 64.5 6.5e-11 >>KIAA0889 ( 535 res) hk08008 (535 aa) initn: 827 init1: 362 opt: 466 Z-score: 287.8 bits: 64.5 E(): 6.5e-11 Smith-Waterman score: 804; 35.503% identity (58.777% similar) in 507 aa overlap (1076-1566:49-519) 1050 1060 1070 1080 1090 1100 KIAA08 EENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPL--SPDDLKYIEE :: .: :...::. . ... . : KIAA08 WDWAPTTSLQEVNKTVLVFALTQHTDQGGRPECALSVISTNNDVSSSVLRRTKSVSSMSE 20 30 40 50 60 70 1110 1120 1130 1140 1150 1160 KIAA08 FNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPF-PDSSWYLTTSVTMTTDTMTS :.. : .: . .:: : . . . : :.:: :... ... . . KIAA08 FESLLDCSP---YLAGG-DARGKKLPNNPAFGFVSSEPGDPEKDTKEKPGLSSRDCNHLG 80 90 100 110 120 130 1170 1180 1190 1200 1210 KIAA08 PEHCQKQP----LRSHVLTEQSGLRVLHSPPAVRRVDSITAAGGEG-----P-FPTSRAR :: : ::.. ...:.:: .:::..::. .. :: : : . :. KIAA08 ALACQDPPGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKIIIEPGFLFTTAK 140 150 160 170 180 190 1220 1230 1240 1250 1260 1270 KIAA08 GSPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASPLHSLEMSKNL . . : : .:: :. ::. ..:. :: .. :: . ::..::: :. KIAA08 PKESAEADGLAESSYGRWLCN---FSRQRLDGGS--AGSPSAAGPGFPAALHDFEMSGNM 200 210 220 230 240 1280 1290 1300 1310 1320 1330 KIAA08 SDDMKEVAFSVRNAICSGPGELQVKDMACQTNGSRTMGTQTVQTISVGLQTEALRGSGVT ::::::.. ::.:. :: : .::. . :: : ..::::..:.::::::. : KIAA08 SDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPR----- 250 260 270 280 290 300 1340 1350 1360 1370 1380 1390 KIAA08 SSPHKCLTPKAGGGATPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPL :: : : . .: :: :.::.:.. ...::....:: :::::::::::::. . KIAA08 SSLH-------GKAWSPRSSSLVSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSV 310 320 330 340 350 1400 1410 1420 1430 1440 1450 KIAA08 PKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVVQDPF : :. ..:. .. : . ::::::::::.::: .:::::::::....:: ... . KIAA08 SKLDSSKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVW 360 370 380 390 400 410 1460 1470 1480 1490 1500 1510 KIAA08 QKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSA . :. :..:. :. : :: : ::.::: . ..: ::: . :: KIAA08 KLGM---SETRAKPEPPKYGIVQEFFRNVCGRAPSPTSSAGE-------EGTKKPEPLS- 420 430 440 450 460 1520 1530 1540 1550 1560 KIAA08 PPGYTLTENVARILNKKLLEHALKEERRQAAH---GPPGLHSDSHSLGDTAEPGPMENQT : .: :.:::::::: . . .:: : . : :. : :: : : : KIAA08 PASYHQPEGVARILNKKAAKLGSSEEVRLTMLPQVGKDGVLRD----GDGAVVLPNEVGG 470 480 490 500 510 520 1570 KIAA08 VLLTAPWGL KIAA08 WDLSFLLVGGVSI 530 1578 residues in 1 query sequences 1985927 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:39 2008 done: Thu Dec 18 15:16:40 2008 Total Scan time: 0.890 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]