hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13353287/chunk_1/iprscan-20080502-13353287.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0806 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 202.6 1.8e-58 4 PF07679.6.ls Immunoglobulin I-set domain 195.3 1.4e-55 3 PF00560.23.ls Leucine Rich Repeat 156.4 6.9e-44 14 PF00560.23.fs Leucine Rich Repeat 132.4 1.1e-36 14 PF00047.15.ls Immunoglobulin domain 107.9 2.7e-29 3 PF00047.15.fs Immunoglobulin domain 102.2 1.4e-27 3 PF07686.7.fs Immunoglobulin V-set domain 54.5 7e-15 3 PF07686.7.ls Immunoglobulin V-set domain 59.7 9e-15 3 PF08205.3.fs CD80-like C2-set immunoglobulin domain 29.7 8.8e-08 2 PF01463.14.fs Leucine rich repeat C-terminal domain 22.6 3.9e-06 1 PF01463.14.ls Leucine rich repeat C-terminal domain 24.6 0.00032 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 3/14 153 175 .. 1 24 [] 13.4 0.75 PF00560.23.fs 3/14 153 175 .. 1 24 [] 11.6 0.041 PF00560.23.ls 4/14 176 198 .. 1 24 [] 20.4 0.0061 PF00560.23.fs 4/14 176 198 .. 1 24 [] 18.5 0.00052 PF00560.23.ls 6/14 224 246 .. 1 24 [] 10.4 3 PF00560.23.ls 7/14 248 270 .. 1 24 [] 11.6 1.8 PF00560.23.ls 8/14 272 294 .. 1 24 [] 13.9 0.54 PF00560.23.fs 8/14 272 294 .. 1 24 [] 12.0 0.031 PF00560.23.ls 10/14 320 342 .. 1 24 [] 17.1 0.057 PF00560.23.fs 10/14 320 342 .. 1 24 [] 15.3 0.004 PF00560.23.ls 11/14 344 366 .. 1 24 [] 12.6 1.2 PF00560.23.ls 13/14 395 417 .. 1 24 [] 13.1 0.94 PF00560.23.fs 13/14 395 417 .. 1 24 [] 11.2 0.052 PF00560.23.ls 14/14 419 441 .. 1 24 [] 12.1 1.5 PF01463.14.ls 1/1 476 501 .. 1 26 [] 24.6 0.00032 PF01463.14.fs 1/1 476 501 .. 1 26 [] 22.6 3.9e-06 PF07686.7.ls 1/3 505 607 .. 1 141 [] 24.2 0.00018 PF07686.7.fs 1/3 505 607 .. 1 141 [] 22.5 7.1e-06 PF07679.6.ls 1/3 506 606 .. 1 96 [] 13.9 7.6e-05 PF00047.15.ls 1/3 520 590 .. 1 65 [] 34.9 2.5e-07 PF00047.15.fs 1/3 520 590 .. 1 65 [] 33.0 2.8e-08 PF07679.6.fs 2/4 568 606 .. 57 96 .] 23.9 2.3e-06 PF07679.6.fs 3/4 610 700 .. 1 96 [] 106.0 2.7e-30 PF07686.7.fs 2/3 610 701 .. 1 141 [] 21.6 1.3e-05 PF07679.6.ls 2/3 610 700 .. 1 96 [] 107.9 2.7e-29 PF07686.7.ls 2/3 610 701 .. 1 141 [] 23.2 0.00022 PF00047.15.fs 2/3 624 685 .. 1 65 [] 32.1 4.7e-08 PF00047.15.ls 2/3 624 685 .. 1 65 [] 34.0 4.8e-07 PF07679.6.ls 3/3 704 791 .. 1 96 [] 73.5 6.2e-19 PF07679.6.fs 4/4 704 791 .. 1 96 [] 71.6 2.8e-20 PF07686.7.ls 3/3 704 792 .. 1 141 [] 12.2 0.0029 PF08205.3.fs 2/2 705 762 .. 1 72 [. 18.5 0.00012 PF00047.15.ls 3/3 718 776 .. 1 65 [] 39.0 1.5e-08 PF00047.15.fs 3/3 718 776 .. 1 65 [] 37.2 1.9e-09 Alignments of top-scoring domains: PF00560.23.ls: domain 3 of 14, from 153 to 175: score 13.4, E = 0.75 *->nLeeLdLsgCNpsltgslpss.l.nl<-* Le+LdLs+ N ++ ++ s+++ + KIAA0806 153 ALESLDLSS-N-IIS-EIKTSsFpRM 175 PF00560.23.fs: domain 3 of 14, from 153 to 175: score 11.6, E = 0.041 *->nLeeLdLsgCNpsltgslpss.l.nl<-* Le+LdLs+ N ++ ++ s+++ + KIAA0806 153 ALESLDLSS-N-IIS-EIKTSsFpRM 175 PF00560.23.ls: domain 4 of 14, from 176 to 198: score 20.4, E = 0.0061 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+Ls+ N ++t +l+++ ++nl KIAA0806 176 QLKYLNLSN-N-RIT-TLEAGcFdNL 198 PF00560.23.fs: domain 4 of 14, from 176 to 198: score 18.5, E = 0.00052 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+Ls+ N ++t +l+++ ++nl KIAA0806 176 QLKYLNLSN-N-RIT-TLEAGcFdNL 198 PF00560.23.ls: domain 6 of 14, from 224 to 246: score 10.4, E = 3 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+ L+L + N ++ + ++ ++++l KIAA0806 224 HLQFLELKR-N-RI-KIVEGLtFqGL 246 PF00560.23.ls: domain 7 of 14, from 248 to 270: score 11.6, E = 1.8 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L +++ N +++ +l ++++ +l KIAA0806 248 SLRSLKMQR-N-GIS-KLKDGaFfGL 270 PF00560.23.ls: domain 8 of 14, from 272 to 294: score 13.9, E = 0.54 *->nLeeLdLsgCNpsltgslpss.l.nl<-* n eeL+L++ N +lt + +++l +l KIAA0806 272 NMEELELEH-N-NLT-RVNKGwLyGL 294 PF00560.23.fs: domain 8 of 14, from 272 to 294: score 12.0, E = 0.031 *->nLeeLdLsgCNpsltgslpss.l.nl<-* n eeL+L++ N +lt + +++l +l KIAA0806 272 NMEELELEH-N-NLT-RVNKGwLyGL 294 PF00560.23.ls: domain 10 of 14, from 320 to 342: score 17.1, E = 0.057 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L eLdLs+ N +lt l++s++ +l KIAA0806 320 RLSELDLSY-N-QLT-RLDESaFvGL 342 PF00560.23.fs: domain 10 of 14, from 320 to 342: score 15.3, E = 0.004 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L eLdLs+ N +lt l++s++ +l KIAA0806 320 RLSELDLSY-N-QLT-RLDESaFvGL 342 PF00560.23.ls: domain 11 of 14, from 344 to 366: score 12.6, E = 1.2 *->nLeeLdLsgCNpsltgslpss.l.nl<-* Le L+L++ N ++t +++++ ++ l KIAA0806 344 LLERLNLGD-N-RVT-HIADGvFrFL 366 PF00560.23.ls: domain 13 of 14, from 395 to 417: score 13.1, E = 0.94 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L L+g N ++ +s+ + ++ +l KIAA0806 395 SLTKLILQG-N-QI-KSITKKaFiGL 417 PF00560.23.fs: domain 13 of 14, from 395 to 417: score 11.2, E = 0.052 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L L+g N ++ +s+ + ++ +l KIAA0806 395 SLTKLILQG-N-QI-KSITKKaFiGL 417 PF00560.23.ls: domain 14 of 14, from 419 to 441: score 12.1, E = 1.5 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+LdL++ N + s+++++++ KIAA0806 419 SLEHLDLNN-N-AIM-SIQENaFsQT 441 PF01463.14.ls: domain 1 of 1, from 476 to 501: score 24.6, E = 0.00032 *->dlrCasPeslrGqplldlppsdfsCp<-* ++ Ca+Pe+l+Gq++l++ +df+C+ KIAA0806 476 NVSCAHPEWLAGQSILNVDLKDFVCD 501 PF01463.14.fs: domain 1 of 1, from 476 to 501: score 22.6, E = 3.9e-06 *->dlrCasPeslrGqplldlppsdfsCp<-* ++ Ca+Pe+l+Gq++l++ +df+C+ KIAA0806 476 NVSCAHPEWLAGQSILNVDLKDFVCD 501 PF07686.7.ls: domain 1 of 3, from 505 to 607: score 24.2, E = 0.00018 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss q+ + +p+ +++ +G +vtL+Ct sss KIAA0806 505 KPQIRT-HPE------------TIIALRGMNVTLTCTAV-----SSS 533 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls +s++ s W + + + y+ ++ n + + g KIAA0806 534 DSPM-STVWRK-DSE------------ILYDVDTENFVRYWQQAGEAL-- 567 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++ L++ n+ D+G Y C v n+ + ++ + +LtV KIAA0806 568 ----EYTSILHLFNVNFTDEGKYQCIVTNHFGSNYSQKAKLTVN 607 PF07686.7.fs: domain 1 of 3, from 505 to 607: score 22.5, E = 7.1e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss q+ + +p+ +++ +G +vtL+Ct sss KIAA0806 505 KPQIRT-HPE------------TIIALRGMNVTLTCTAV-----SSS 533 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls +s++ s W + + + y+ ++ n + + g KIAA0806 534 DSPM-STVWRK-DSE------------ILYDVDTENFVRYWQQAGEAL-- 567 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++ L++ n+ D+G Y C v n+ + ++ + +LtV KIAA0806 568 ----EYTSILHLFNVNFTDEGKYQCIVTNHFGSNYSQKAKLTVN 607 PF07679.6.ls: domain 1 of 3, from 506 to 606: score 13.9, E = 7.6e-05 *->PkFtqkpkdveVqeGesarfeCkVtGt..PePtVsWfKdGqplssvl P++ ++p+ + + G ++++C++ +++ + + W Kd + l KIAA0806 506 PQIRTHPETIIALRGMNVTLTCTAVSSsdSPMSTVWRKDSEILYD-- 550 lpsdrfkvtydg....GsgtytLtIsnvqpdDsGkYtCvAtNsaGe.aea +++ f + ++ +t+ L nv+ D+GkY C++tN +G++ + KIAA0806 551 VDTENFVRYWQQageaLEYTSILHLFNVNFTDEGKYQCIVTNHFGSnYSQ 600 saeLtV<-* +a+LtV KIAA0806 601 KAKLTV 606 PF00047.15.ls: domain 1 of 3, from 520 to 590: score 34.9, E = 2.5e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G vtLtC++ ++++++ + W++++ l + ++ +++++ + KIAA0806 520 GMNVTLTCTAVSSSDSPMSTVWRKDSEiLYdVDTENFVRYWQQAGEA 566 t....sLtitnvtpeDggtYtCvv<-* + +++L++ nv D+g Y C v KIAA0806 567 LeytsILHLFNVNFTDEGKYQCIV 590 PF00047.15.fs: domain 1 of 3, from 520 to 590: score 33.0, E = 2.8e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G vtLtC++ ++++++ + W++++ l + ++ +++++ + KIAA0806 520 GMNVTLTCTAVSSSDSPMSTVWRKDSEiLYdVDTENFVRYWQQAGEA 566 t....sLtitnvtpeDggtYtCvv<-* + +++L++ nv D+g Y C v KIAA0806 567 LeytsILHLFNVNFTDEGKYQCIV 590 PF07679.6.fs: domain 2 of 4, from 568 to 606: score 23.9, E = 2.3e-06 *->gGsgtytLtIsnvqpdDsGkYtCvAtNsaGe.aeasaeLtV<-* + +t+ L nv+ D+GkY C++tN +G++ + +a+LtV KIAA0806 568 E--YTSILHLFNVNFTDEGKYQCIVTNHFGSnYSQKAKLTV 606 PF07679.6.fs: domain 3 of 4, from 610 to 700: score 106.0, E = 2.7e-30 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P+F++ p d++++ G ar+eC ++G+P P++sW Kd+G + ++ + KIAA0806 610 PSFLKTPMDLTIRTGAMARLECAAEGHPAPQISWQKDgGTDFPA--A 654 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV +++r++v ++ ++I nv+++D+G+Y+C A+N aG +a a+LtV KIAA0806 655 RERRMHVMPED----DVFFIANVKIEDMGIYSCMAQNTAGGLSANASLTV 700 <-* KIAA0806 - - PF07686.7.fs: domain 2 of 3, from 610 to 701: score 21.6, E = 1.3e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +s + + p +t +G++++L C + + KIAA0806 610 PSFLKT--PM------------DLTIRTGAMARLECAAE---GHP-- 637 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl ++ +i+W +++++ + +e++ +v+++ KIAA0806 638 --AP-QISWQKDgGTD-------------FPAARERRMHVMPEDDV---- 667 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* I n++ +D G+Y C n+ + + LtVl KIAA0806 668 ----------FFIANVKIEDMGIYSCMAQNT-AGGLSANASLTVL 701 PF07679.6.ls: domain 2 of 3, from 610 to 700: score 107.9, E = 2.7e-29 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P+F++ p d++++ G ar+eC ++G+P P++sW Kd+G + ++ + KIAA0806 610 PSFLKTPMDLTIRTGAMARLECAAEGHPAPQISWQKDgGTDFPA--A 654 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV +++r++v ++ ++I nv+++D+G+Y+C A+N aG +a a+LtV KIAA0806 655 RERRMHVMPED----DVFFIANVKIEDMGIYSCMAQNTAGGLSANASLTV 700 <-* KIAA0806 - - PF07686.7.ls: domain 2 of 3, from 610 to 701: score 23.2, E = 0.00022 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +s + + p +t +G++++L C + + KIAA0806 610 PSFLKT--PM------------DLTIRTGAMARLECAAE---GHP-- 637 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl ++ +i+W +++++ + +e++ +v+++ KIAA0806 638 --AP-QISWQKDgGTD-------------FPAARERRMHVMPEDDV---- 667 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* I n++ +D G+Y C n+ + + LtVl KIAA0806 668 ----------FFIANVKIEDMGIYSCMAQNT-AGGLSANASLTVL 701 PF00047.15.fs: domain 2 of 3, from 624 to 685: score 32.1, E = 4.7e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk..lt.gvlvtssenngdsty G +++L C + +g+p ++++W+++g+++ + + + +++ d + KIAA0806 624 GAMARLECAA--EGHPAPQISWQKDGGtdFPaARERRMHVMPEDDV- 667 qtsLtitnvtpeDggtYtCvv<-* + i nv+ eD g+Y+C++ KIAA0806 668 ---FFIANVKIEDMGIYSCMA 685 PF00047.15.ls: domain 2 of 3, from 624 to 685: score 34.0, E = 4.8e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk..lt.gvlvtssenngdsty G +++L C + +g+p ++++W+++g+++ + + + +++ d + KIAA0806 624 GAMARLECAA--EGHPAPQISWQKDGGtdFPaARERRMHVMPEDDV- 667 qtsLtitnvtpeDggtYtCvv<-* + i nv+ eD g+Y+C++ KIAA0806 668 ---FFIANVKIEDMGIYSCMA 685 PF07679.6.ls: domain 3 of 3, from 704 to 791: score 73.5, E = 6.2e-19 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++++d +V+ Ge+a+++C + G+P P W+Kd+ pl + KIAA0806 704 PSFIRPLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLV---- 746 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++r+ + + + + L+I ++ +D+GkYtC+ +N G+ ++ L+V KIAA0806 747 TERHFFAAAN----QLLIIVDAGLEDAGKYTCIMSNTLGTERGHIYLNV 791 -* KIAA0806 - - PF07679.6.fs: domain 4 of 4, from 704 to 791: score 71.6, E = 2.8e-20 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++++d +V+ Ge+a+++C + G+P P W+Kd+ pl + KIAA0806 704 PSFIRPLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLV---- 746 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++r+ + + + + L+I ++ +D+GkYtC+ +N G+ ++ L+V KIAA0806 747 TERHFFAAAN----QLLIIVDAGLEDAGKYTCIMSNTLGTERGHIYLNV 791 -* KIAA0806 - - PF07686.7.ls: domain 3 of 3, from 704 to 792: score 12.2, E = 0.0029 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +s + + + tv +G+++ L+C +++ KIAA0806 704 PSFIRP--LE------------DKTVTRGETAVLQCIAG---GSP-- 731 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +++W + + gp l+ ++ + KIAA0806 732 --AP-RLNWTK----DDGPLLVT--------------------ERHFFAA 754 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +n L I ++ l+D G Y+C sn+ ++ g + L V KIAA0806 755 ANQL-----LIIVDAGLEDAGKYTCIMSNT-LGTERGHIYLNVI 792 PF08205.3.fs: domain 2 of 2, from 705 to 762: score 18.5, E = 0.00012 *->peIeppa.sllegeksenlevvatCvlpysagGkPapritWyldgke +I p ++ +++ + ++ v++C+ agG Papr+ W +d+++ KIAA0806 705 SFIRPLEdKTVTRG----ETAVLQCI----AGGSPAPRLNWTKDDGP 743 lvpeekteaittsseqdpesglytvt<-* l +t+ + + ++l ++ KIAA0806 744 L-------LVTERHFFAAANQLLIIV 762 PF00047.15.ls: domain 3 of 3, from 718 to 776: score 39.0, E = 1.5e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge++ L+C + +g+p ++++W++++++l +++ + n KIAA0806 718 GETAVLQCIA--GGSPAPRLNWTKDDGpLLvTERHFFAAANQL---- 758 tsLtitnvtpeDggtYtCvv<-* L i ++ eD+g YtC KIAA0806 759 --LIIVDAGLEDAGKYTCIM 776 PF00047.15.fs: domain 3 of 3, from 718 to 776: score 37.2, E = 1.9e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge++ L+C + +g+p ++++W++++++l +++ + n KIAA0806 718 GETAVLQCIA--GGSPAPRLNWTKDDGpLLvTERHFFAAANQL---- 758 tsLtitnvtpeDggtYtCvv<-* L i ++ eD+g YtC KIAA0806 759 --LIIVDAGLEDAGKYTCIM 776 //