hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13353287/chunk_1/iprscan-20080502-13353287.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0806 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00369 198.9 4.7e-55 11 SM00409 143.3 2.5e-38 3 SM00408 132.9 3.6e-35 3 SM00365 49.0 6.4e-10 6 SM00082 43.7 2.5e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00369 1/11 151 174 .. 1 24 [] 3.7 1.5e+02 SM00369 2/11 176 197 .. 1 24 [] 17.4 2 SM00369 3/11 222 245 .. 1 24 [] 17.7 1.7 SM00365 1/6 222 243 .. 1 22 [] 12.9 21 SM00369 4/11 246 269 .. 1 24 [] 19.2 0.58 SM00369 5/11 270 293 .. 1 24 [] 13.1 10 SM00365 2/6 294 315 .. 1 22 [] 5.4 1.7e+02 SM00369 6/11 294 317 .. 1 24 [] 18.2 1.1 SM00369 7/11 318 341 .. 1 24 [] 17.1 2.6 SM00365 3/6 318 339 .. 1 22 [] 3.1 3.4e+02 SM00369 8/11 342 365 .. 1 24 [] 23.7 0.026 SM00369 9/11 366 392 .. 1 24 [] 14.2 7.7 SM00365 4/6 366 388 .. 1 22 [] 11.6 31 SM00369 10/11 393 416 .. 1 24 [] 23.8 0.025 SM00365 5/6 393 414 .. 1 22 [] 7.1 1.1e+02 SM00369 11/11 417 440 .. 1 24 [] 30.8 0.00018 SM00365 6/6 417 438 .. 1 22 [] 8.8 67 SM00082 1/1 451 501 .. 1 55 [] 43.7 2.5e-08 SM00409 1/3 512 607 .. 1 58 [] 49.9 3.4e-10 SM00408 1/3 518 595 .. 1 56 [] 27.9 0.0014 SM00409 2/3 616 701 .. 1 58 [] 47.5 1.7e-09 SM00408 2/3 622 690 .. 1 56 [] 51.8 8.9e-11 SM00409 3/3 710 792 .. 1 58 [] 46.0 5.1e-09 SM00408 3/3 716 781 .. 1 56 [] 53.1 3.5e-11 Alignments of top-scoring domains: SM00369: domain 1 of 11, from 151 to 174: score 3.7, E = 1.5e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* p+L++LdLs+N ++++ F KIAA0806 151 YPALESLDLSSNIISEIKTSSFPR 174 SM00369: domain 2 of 11, from 176 to 197: score 17.4, E = 2 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +L+ L+LsnN++t+L +g F++ KIAA0806 176 --QLKYLNLSNNRITTLEAGCFDN 197 SM00369: domain 3 of 11, from 222 to 245: score 17.7, E = 1.7 *->LpnLreLdLsnNqLtsLPpgaFqg<-* Lp+L+ L L +N+++ + +Fqg KIAA0806 222 LPHLQFLELKRNRIKIVEGLTFQG 245 SM00365: domain 1 of 6, from 222 to 243: score 12.9, E = 21 *->LtnLeeLdLsqNkIkkiENLde<-* L +L+ L+L N+Ik +E+L KIAA0806 222 LPHLQFLELKRNRIKIVEGLTF 243 SM00369: domain 4 of 11, from 246 to 269: score 19.2, E = 0.58 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +Lr+L ++N ++ L +gaF g KIAA0806 246 LDSLRSLKMQRNGISKLKDGAFFG 269 SM00369: domain 5 of 11, from 270 to 293: score 13.1, E = 10 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L n +eL L++N+Lt++ g + g KIAA0806 270 LNNMEELELEHNNLTRVNKGWLYG 293 SM00365: domain 2 of 6, from 294 to 315: score 5.4, E = 1.7e+02 *->LtnLeeLdLsqNkIkkiENLde<-* L L+ L++sqN I+ i+ KIAA0806 294 LRMLQQLYVSQNAIERISPDAW 315 SM00369: domain 6 of 11, from 294 to 317: score 18.2, E = 1.1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L+ L+ s N+++++ p+a++ KIAA0806 294 LRMLQQLYVSQNAIERISPDAWEF 317 SM00369: domain 7 of 11, from 318 to 341: score 17.1, E = 2.6 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L eLdLs+NqLt+L + aF g KIAA0806 318 CQRLSELDLSYNQLTRLDESAFVG 341 SM00365: domain 3 of 6, from 318 to 339: score 3.1, E = 3.4e+02 *->LtnLeeLdLsqNkIkkiENLde<-* ++L eLdLs N+++ ++ KIAA0806 318 CQRLSELDLSYNQLTRLDESAF 339 SM00369: domain 8 of 11, from 342 to 365: score 23.7, E = 0.026 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L++L+L++N+ t++ +g+F+ KIAA0806 342 LSLLERLNLGDNRVTHIADGVFRF 365 SM00369: domain 9 of 11, from 366 to 392: score 14.2, E = 7.7 *->LpnLreLdLsnNqL.tsLP..pgaFqg<-* L+nL++LdL nN ++ ++ + ++aF+g KIAA0806 366 LSNLQTLDLRNNEIsWAIEdaSEAFAG 392 SM00365: domain 4 of 6, from 366 to 388: score 11.6, E = 31 *->LtnLeeLdLsqNkI.kkiENLde<-* L+nL++LdL++N I+ iE+ +e KIAA0806 366 LSNLQTLDLRNNEIsWAIEDASE 388 SM00369: domain 10 of 11, from 393 to 416: score 23.8, E = 0.025 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L++L L++Nq++s+ aF g KIAA0806 393 LTSLTKLILQGNQIKSITKKAFIG 416 SM00365: domain 5 of 6, from 393 to 414: score 7.1, E = 1.1e+02 *->LtnLeeLdLsqNkIkkiENLde<-* Lt L+ L L++N+Ik+i KIAA0806 393 LTSLTKLILQGNQIKSITKKAF 414 SM00369: domain 11 of 11, from 417 to 440: score 30.8, E = 0.00018 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L++LdL+nN++ s+ ++aF+ KIAA0806 417 LESLEHLDLNNNAIMSIQENAFSQ 440 SM00365: domain 6 of 6, from 417 to 438: score 8.8, E = 67 *->LtnLeeLdLsqNkIkkiENLde<-* L Le+LdL++N I +i+ KIAA0806 417 LESLEHLDLNNNAIMSIQENAF 438 SM00082: domain 1 of 1, from 451 to 501: score 43.7, E = 2.5e-08 *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll ++ CDC+L+wLl+wl + +q +v ++ Ca+Pe+l+Gq +l + KIAA0806 451 SSLLCDCHLKWLLQWLVD---NNFQHSV-NVSCAHPEWLAGQSILNV 493 lpsefsCp<-* ++f+C+ KIAA0806 494 DLKDFVCD 501 SM00409: domain 1 of 3, from 512 to 607: score 49.9, E = 3.4e-10 *->pp.vtvkeGesvtLtC.as.......titWy................ p+++ + +G +vtLtC+a ++++++ + W++++ + ++ + + KIAA0806 512 PEtIIALRGMNVTLTCtAVsssdspmSTVWRkdseilydvdtenfvr 558 ..............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttL ++ + ++ L++ nv + D+ G Y+C +t++ gs +s q ++L KIAA0806 559 ywqqagealeytsiLHLfNVNFTDE---GKYQCIVTnhFGSNYS-QKAKL 604 tVl<-* tV KIAA0806 605 TVN 607 SM00408: domain 1 of 3, from 518 to 595: score 27.9, E = 0.0014 *->leGqsVtLtCp.asgdpvp.nItWlk.gkplp............... l G +VtLtC +s ++ p + W+k+++ l + ++++ + ++ + KIAA0806 518 LRGMNVTLTCTaVSSSDSPmSTVWRKdSEILYdvdtenfvrywqqag 564 ....sgstLtiknvsleDsGlYtCvArNsvg<-* + ++ s L++ nv + D+G+Y+C+++N+ g KIAA0806 565 ealeYTSILHLFNVNFTDEGKYQCIVTNHFG 595 SM00409: domain 2 of 3, from 616 to 701: score 47.5, E = 1.7e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p ++t + G ++L+C a++++ ++i+W ++++++ + + ++ + KIAA0806 616 PMdLTIRTGAMARLECaAEghpapQISWQkdggtdfpaarerrmhvm 662 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++ + I nv+ eD G+Y C+a++++g s+ ++ LtVl KIAA0806 663 peddvFFIaNVKIEDM---GIYSCMAQntAGGLSA--NASLTVL 701 SM00408: domain 2 of 3, from 622 to 690: score 51.8, E = 8.9e-11 *->leGqsVtLtCpasgdpvpnItWlk..gkplp...........sgstL + G ++L+C a+g p+p+I+W k++g+ p ++++ + + + KIAA0806 622 RTGAMARLECAAEGHPAPQISWQKdgGTDFPaarerrmhvmpEDDVF 668 tiknvsleDsGlYtCvArNsvg<-* i nv+ eD G+Y+C A+N +g KIAA0806 669 FIANVKIEDMGIYSCMAQNTAG 690 SM00409: domain 3 of 3, from 710 to 792: score 46.0, E = 5.1e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ tv +Ge+++L+C a +++ +++ W++++++ + ++ + KIAA0806 710 LEdKTVTRGETAVLQCiAGgspapRLNWTkddgpllvterhffaaan 756 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + L+I ++ +eD+ G YtC +++ g+ + ++L V KIAA0806 757 qlLIIvDAGLEDA---GKYTCIMSntLGTERG--HIYLNVI 792 SM00408: domain 3 of 3, from 716 to 781: score 53.1, E = 3.5e-11 *->leGqsVtLtCpasgdpvpnItWlk..gkplp........sgstLtik G++++L+C+a g+p+p W+k++g l ++++ ++ L i KIAA0806 716 TRGETAVLQCIAGGSPAPRLNWTKddGPLLVterhffaaANQLLIIV 762 nvsleDsGlYtCvArNsvg<-* ++ leD+G+YtC+ +N g KIAA0806 763 DAGLEDAGKYTCIMSNTLG 781 //