hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13390564/chunk_1/iprscan-20080502-13390564.nocrc
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Query sequence: KIAA0808
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00505.9.fs HMG (high mobility group) box                   77.1    4.6e-21   1
PF00505.9.ls HMG (high mobility group) box                   79.2    1.2e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00505.9.fs   1/1     265   333 ..     1    69 []    77.1  4.6e-21
PF00505.9.ls   1/1     265   333 ..     1    69 []    79.2  1.2e-20

Alignments of top-scoring domains:
PF00505.9.fs: domain 1 of 1, from 265 to 333: score 77.1, E = 4.6e-21
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      P +P+sA+ lf+++  a ik +nP+++ +e+sk+++ +W +L ee K
    KIAA0808   265    PQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQK 311  

                   apYeakAekeKarYekempeYk<-*
                   + Y +k e++K++Y+k++++Y+   
    KIAA0808   312 QVYKKKTEAAKKEYLKQLAAYR    333  

PF00505.9.ls: domain 1 of 1, from 265 to 333: score 79.2, E = 1.2e-20
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      P +P+sA+ lf+++  a ik +nP+++ +e+sk+++ +W +L ee K
    KIAA0808   265    PQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQK 311  

                   apYeakAekeKarYekempeYk<-*
                   + Y +k e++K++Y+k++++Y+   
    KIAA0808   312 QVYKKKTEAAKKEYLKQLAAYR    333  

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