# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bg00036.fasta.huge -Q ../query/KIAA0820.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0820, 892 aa
 vs ./tmplib.23663 library

1986613 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 11.8648+/-0.0115; mu= -15.4965+/- 0.781
 mean_var=605.5870+/-144.103, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.052118

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0567  ( 978 res)   hh02110                     ( 978)  372 43.6 0.00014


>>KIAA0567  ( 978 res)   hh02110                          (978 aa)
 initn: 296 init1: 183 opt: 372  Z-score: 174.3  bits: 43.6 E(): 0.00014
Smith-Waterman score: 373;  23.647% identity (56.914% similar) in 499 aa overlap (36-507:275-758)

          10        20        30        40         50        60    
KIAA08 SSQGSAAPTPCQVVEASRDQLVAGPSGKMGNREMEE-LIPLVNRLQDAFSALGQSCLLE-
                                     .:.... :: . ... :..:    :   . 
KIAA05 LKYQRILERLEKENKELRKLVLQKDDKGIHHRKLKKSLIDMYSEVLDVLSDYDASYNTQD
          250       260       270       280       290       300    

             70        80        90        100       110       120 
KIAA08 -LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVTSKAEYAEFLHCKG
        ::...::: :::::.:::: ..   ..::::: ..:: :. . :  .  . : :   . 
KIAA05 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSR
          310       320       330       340       350       360    

                 130       140       150       160       170       
KIAA08 K----KFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVP
       .    :  :.  .: ::: .  . .  .  .:   :.: : .: .  ..:.::::. .. 
KIAA05 EFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTV
          370       380       390       400       410       420    

       180       190       200       210       220       230       
KIAA08 VGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVI
       .. . :: .  :  .   ..   : .:: .  ...:   : .  :....::.: ::: :.
KIAA05 TSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVL
          430       440       450       460       470       480    

       240           250       260        270       280       290  
KIAA08 TKLDLMDEGTDA----RDVLENKLLPLRR-GYVGVVNRSQKDIDGKKDIKAAMLAERKFF
       ::.:: .... .    ....:.::.:..  :: .::  . :  .....:.:    :..::
KIAA05 TKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVV--TGKG-NSSESIEAIREYEEEFF
          490       500       510       520          530       540 

            300       310       320       330       340         350
KIAA08 LSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAYKN--F
        .    . .   :   :  .: ...:.  . : . ..  .      :.:......:   :
KIAA05 QNS---KLLKTSMLKAH--QVTTRNLSLAVSDCFWKMVRE------SVEQQADSFKATRF
                550         560       570             580       590

              360       370       380       390       400          
KIAA08 KPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFH----ERFPFE
       . :   ...   :. ...  . :::  .   :.: .:      . ..:..    ::   .
KIAA05 NLETEWKNNYPRLRELDRNEL-FEKAKNEILDEVISLSQVTPKHWEEILQQSLWERVSTH
              600       610        620       630       640         

               410       420       430       440       450         
KIAA08 IVK-------MEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLK
       ...       . .:   .   ..  .:.    .    . ..:.:.. ..    .  :. :
KIAA05 VIENIYLPAAQTMNSGTFNTTVDIKLKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGK
     650       660       670       680       690       700         

     460       470       480       490        500       510        
KIAA08 SVDLVIQELINTVKKCTKKLANFPRLCEETERIVA-NHIREREGKTKDQVLLLIDIQVSY
         : ....: ..::. . :  ..  . :.. :..  : ...:  . :.:           
KIAA05 EHDDIFDKLKEAVKEESIKRHKWNDFAEDSLRVIQHNALEDRSISDKQQWDAAIYFMEEA
     710       720       730       740       750       760         

      520       530       540       550       560       570        
KIAA08 INTNHEDFIGFANAQQRSSQVHKKTTVGNQVIRKGWLTISNIGIMKGGSKGYWFVLTAES
                                                                   
KIAA05 LQARLKDTENAIENMVGPDWKKRWLYWKNRTQEQCVHNETKNELEKMLKCNEEHPAYLAS
     770       780       790       800       810       820         




892 residues in 1 query   sequences
1986613 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:30 2008 done: Thu Dec 18 15:17:31 2008
 Total Scan time:  0.600 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]