hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14004939/chunk_1/iprscan-20080502-14004939.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0820 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01031.10.ls Dynamin central region 503.2 2.7e-148 1 PF01031.10.fs Dynamin central region 501.4 9.7e-148 1 PF00350.13.ls Dynamin family 328.7 9.6e-96 1 PF00350.13.fs Dynamin family 326.8 3.4e-95 1 PF02212.8.fs Dynamin GTPase effector domain 124.3 9.3e-36 1 PF02212.8.ls Dynamin GTPase effector domain 126.3 8e-35 1 PF00169.19.fs PH domain 57.0 6.6e-17 1 PF00169.19.ls PH domain 59.1 1.4e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00350.13.fs 1/1 67 240 .. 1 217 [] 326.8 3.4e-95 PF00350.13.ls 1/1 67 240 .. 1 217 [] 328.7 9.6e-96 PF01031.10.ls 1/1 249 542 .. 1 299 [] 503.2 2.7e-148 PF01031.10.fs 1/1 249 542 .. 1 299 [] 501.4 9.7e-148 PF00169.19.ls 1/1 549 654 .. 1 92 [] 59.1 1.4e-14 PF00169.19.fs 1/1 549 654 .. 1 92 [] 57.0 6.6e-17 PF02212.8.fs 1/1 677 768 .. 1 98 [] 124.3 9.3e-36 PF02212.8.ls 1/1 677 768 .. 1 98 [] 126.3 8e-35 Alignments of top-scoring domains: PF00350.13.fs: domain 1 of 1, from 67 to 240: score 326.8, E = 3.4e-95 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges IaVvG qS+GKSSvL++ +Grdf LP rg+g ++Trrplv lql++ KIAA0820 67 IAVVGGQSAGKSSVLENFVGRDF-LP-RGSG-IVTRRPLV-LQLVT- 108 peaieivsipgavkveykdflh.plkkfedfsevreeieketdriagknk k+ey++flh ++kkf+df+evr eie+etdr++g nk KIAA0820 109 ------------SKAEYAEFLHcKGKKFTDFDEVRLEIEAETDRVTGMNK 146 gisseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSv giss pi+l+++sp+v++ltL+D+PG+++ v KIAA0820 147 GISSI------------------PINLRVYSPHVLNLTLIDLPGITK--V 176 avgdqqPeDieeqIrelteeyiskpadiILaVvpAnvaLdlstssdealf +vgdq P+Die+qIre+++++i +++++ILaV+pAn+ dl++s +al+ KIAA0820 177 PVGDQ-PPDIEYQIREMIMQFITRENCLILAVTPANT--DLANS--DALK 221 larevdpkgerdktigVltKd<-* la+evdp+g+r tigV+tK+ KIAA0820 222 LAKEVDPQGLR--TIGVITKL 240 PF00350.13.ls: domain 1 of 1, from 67 to 240: score 328.7, E = 9.6e-96 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges IaVvG qS+GKSSvL++ +Grdf LP rg+g ++Trrplv lql++ KIAA0820 67 IAVVGGQSAGKSSVLENFVGRDF-LP-RGSG-IVTRRPLV-LQLVT- 108 peaieivsipgavkveykdflh.plkkfedfsevreeieketdriagknk k+ey++flh ++kkf+df+evr eie+etdr++g nk KIAA0820 109 ------------SKAEYAEFLHcKGKKFTDFDEVRLEIEAETDRVTGMNK 146 gisseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSv giss pi+l+++sp+v++ltL+D+PG+++ v KIAA0820 147 GISSI------------------PINLRVYSPHVLNLTLIDLPGITK--V 176 avgdqqPeDieeqIrelteeyiskpadiILaVvpAnvaLdlstssdealf +vgdq P+Die+qIre+++++i +++++ILaV+pAn+ dl++s +al+ KIAA0820 177 PVGDQ-PPDIEYQIREMIMQFITRENCLILAVTPANT--DLANS--DALK 221 larevdpkgerdktigVltKd<-* la+evdp+g+r tigV+tK+ KIAA0820 222 LAKEVDPQGLR--TIGVITKL 240 PF01031.10.ls: domain 1 of 1, from 249 to 542: score 503.2, E = 2.7e-148 *->avDiLrNrViPLkkGYmgVvNRGQqDIqekkSlteALqkErkFFenH a+D+L+N+++PL++GY+gVvNR+Q+DI +kk++++A +ErkFF +H KIAA0820 249 ARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAERKFFLSH 295 PsYrtLadrggaTvPyLAkkLtqeLvsHIrktLPdLenqInetlqqtekE P Yr++adr+g+ P+L+k+L+q+L++HIr+tLP +n+++ +l+++e E KIAA0820 296 PAYRHIADRMGT--PHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHE 343 LqkYGadipedeaeKtafLlqkItaFnqdiislieGeekevstnElrgGa ++ Y++++ped+++Kt++Llq++++F+ d+++ ieG++++v+t El+gGa KIAA0820 344 VEAYKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGA 393 rIryiFhewfghllesfdpdeklirsdIrtaernyrGrelpLFvpykaFE +I++iFhe+f+++++++++ ek++r++I++a++n++G++ +LF+p++aFE KIAA0820 394 KINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFE 443 viVKkQIkrLeEPalkcvelVteelrkifhqcsNstkefsrFpnLrraak +iVKkQI++L++P+lk v+lV++el++++++c+ k++++Fp+L+++++ KIAA0820 444 AIVKKQIVKLKGPSLKSVDLVIQELINTVKKCT---KKLANFPRLCEETE 490 ekiedilreqeepaekmIrllfdmEqiyyntdhpyfiglqkarekeaeke +++ +++re+e +++ +++ll+d++ +y+nt+h++fig+++a++++ + KIAA0820 491 RIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVH 540 kk<-* kk KIAA0820 541 KK 542 PF01031.10.fs: domain 1 of 1, from 249 to 542: score 501.4, E = 9.7e-148 *->avDiLrNrViPLkkGYmgVvNRGQqDIqekkSlteALqkErkFFenH a+D+L+N+++PL++GY+gVvNR+Q+DI +kk++++A +ErkFF +H KIAA0820 249 ARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAERKFFLSH 295 PsYrtLadrggaTvPyLAkkLtqeLvsHIrktLPdLenqInetlqqtekE P Yr++adr+g+ P+L+k+L+q+L++HIr+tLP +n+++ +l+++e E KIAA0820 296 PAYRHIADRMGT--PHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHE 343 LqkYGadipedeaeKtafLlqkItaFnqdiislieGeekevstnElrgGa ++ Y++++ped+++Kt++Llq++++F+ d+++ ieG++++v+t El+gGa KIAA0820 344 VEAYKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGA 393 rIryiFhewfghllesfdpdeklirsdIrtaernyrGrelpLFvpykaFE +I++iFhe+f+++++++++ ek++r++I++a++n++G++ +LF+p++aFE KIAA0820 394 KINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFE 443 viVKkQIkrLeEPalkcvelVteelrkifhqcsNstkefsrFpnLrraak +iVKkQI++L++P+lk v+lV++el++++++c+ k++++Fp+L+++++ KIAA0820 444 AIVKKQIVKLKGPSLKSVDLVIQELINTVKKCT---KKLANFPRLCEETE 490 ekiedilreqeepaekmIrllfdmEqiyyntdhpyfiglqkarekeaeke +++ +++re+e +++ +++ll+d++ +y+nt+h++fig+++a++++ + KIAA0820 491 RIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVH 540 kk<-* kk KIAA0820 541 KK 542 PF00169.19.ls: domain 1 of 1, from 549 to 654: score 59.1, E = 1.4e-14 *->vikeGwLlkkg...gkkswkkRyfvLfddvLlyykdkk.kkpkgsip vi++GwL+ + k++ k ++fvL+ +L++ykd+ +k++k+++p KIAA0820 549 VIRKGWLTISNigiMKGGSKGYWFVLTAESLSWYKDDEeKEKKYMLP 595 Lsgiqvtkvpdn..krkncFeirt.dr.......etlllqaeseeerkeW L++++v++v+++ k++F + ++++++ ++ + l+l+++s+e+ +W KIAA0820 596 LDNLKVRDVEKSfmSSKHIFALFNtEQrnvykdyRFLELACDSQEDVDSW 645 vkaiqsair<-* +++ +a KIAA0820 646 KASLLRAGV 654 PF00169.19.fs: domain 1 of 1, from 549 to 654: score 57.0, E = 6.6e-17 *->vikeGwLlkkg...gkkswkkRyfvLfddvLlyykdkk.kkpkgsip vi++GwL+ + k++ k ++fvL+ +L++ykd+ +k++k+++p KIAA0820 549 VIRKGWLTISNigiMKGGSKGYWFVLTAESLSWYKDDEeKEKKYMLP 595 Lsgiqvtkvpdn..krkncFeirt.dr.......etlllqaeseeerkeW L++++v++v+++ k++F + ++++++ ++ + l+l+++s+e+ +W KIAA0820 596 LDNLKVRDVEKSfmSSKHIFALFNtEQrnvykdyRFLELACDSQEDVDSW 645 vkaiqsair<-* +++ +a KIAA0820 646 KASLLRAGV 654 PF02212.8.fs: domain 1 of 1, from 677 to 768: score 124.3, E = 9.3e-36 *->qeeseleeIklllkSYfnivrktladqvPKaImyllvnefKdslqnF q e+++e+I++l++SY++i+ k ++d +PK Im+l++n++Kd++++ KIAA0820 677 QLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINS- 722 QKellakLykPrakelfdeLLeEspeiaskRkelkkrLerLkkArqiise ella+Ly +e+++ L+eEs e a++R e+ +++ +Lk+A ii + KIAA0820 723 --ELLAQLYS---SEDQNTLMEESAEQAQRRDEMLRMYQALKEALGIIGD 767 v<-* + KIAA0820 768 I 768 PF02212.8.ls: domain 1 of 1, from 677 to 768: score 126.3, E = 8e-35 *->qeeseleeIklllkSYfnivrktladqvPKaImyllvnefKdslqnF q e+++e+I++l++SY++i+ k ++d +PK Im+l++n++Kd++++ KIAA0820 677 QLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINS- 722 QKellakLykPrakelfdeLLeEspeiaskRkelkkrLerLkkArqiise ella+Ly +e+++ L+eEs e a++R e+ +++ +Lk+A ii + KIAA0820 723 --ELLAQLYS---SEDQNTLMEESAEQAQRRDEMLRMYQALKEALGIIGD 767 v<-* + KIAA0820 768 I 768 //