HUGE

Gene/Protein Characteristic Table for KIAA0825

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05624
Accession No. :	AB020632
Description :
HUGO Gene Name :
Clone Name :	hh03427 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5751 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4087 bp

Genome contig ID gi51511721r_93674711
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CACCCCAGCCTGGGCAATGAGTGGGGCTTCGTCTC
Flanking genome sequence
(99724 - 99675)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAATCCATGTACTCAACATATACTCAAGTCCTGCAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 r 93774435 93838645 9 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 553 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW96022	0	99.8	hCG2016227, iso...	Homo sapiens
EAW96021	0	99.8	hCG2016227, iso...	Homo sapiens
XP_517655	0	97.8	hypothetical pr...	Pan troglodytes
XP_001091049	4e-216	94.7	similar to CG14...	Macaca mulatta
XP_536295	5.1e-192	85.4	similar to CG14...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCTGCTAAATCACTGTCTATG

Primer_r
: AATTGGTGGACAGTCTTAGGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CCTGCTAAATCACTGTCTATG
Primer_r	: AATTGGTGGACAGTCTTAGGC
PCR product length	: 164 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4087 bp
Genome contig ID	gi51511721r_93674711
PolyA signal sequence (None)	+--------+--------+----*----+---- CACCCCAGCCTGGGCAATGAGTGGGGCTTCGTCTC
Flanking genome sequence (99724 - 99675)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAATCCATGTACTCAACATATACTCAAGTCCTGCAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	r	93774435	93838645	9	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0825

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information