hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14125311/chunk_1/iprscan-20080502-14125311.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0827 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00429 66.7 2.8e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00429 1/1 521 619 .. 1 111 [] 66.7 2.8e-15 Alignments of top-scoring domains: SM00429: domain 1 of 1, from 521 to 619: score 66.7, E = 2.8e-15 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW P+I++ s +s+++ G + ++ l Gkn+ g+ v ++ +v +++ W KIAA0827 521 VPEILKKSLHSCSVKGEE-EVFLIGKNFLK-GTKVIFQENVSDEnSW 565 evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgf.dn +++++++++ h ++++++++Ppy++q+ ++ +v v +++ +n KIAA0827 566 KSEAEIDMELFH----QNHLIVKVPPYHDQH-ITLPVSV----GIYVvTN 606 ggvrtelsppspFtYv<-* +g++ + +pFtY+ KIAA0827 607 AGRSHD---VQPFTYT 619 //