hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14161807/chunk_1/iprscan-20080502-14161807.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0829 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08623.1.ls TATA-binding protein interacting (TIP20) 337.7 1.9e-98 1 PF08623.1.fs TATA-binding protein interacting (TIP20) 337.6 1.9e-98 2 PF02985.12.ls HEAT repeat 103.0 8.1e-28 12 PF02985.12.fs HEAT repeat 98.3 1.5e-26 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 1/12 90 126 .. 1 36 [] 21.9 0.0021 PF02985.12.ls 3/12 217 253 .. 1 36 [] 15.8 0.15 PF02985.12.ls 5/12 297 333 .. 1 36 [] 21.9 0.0021 PF02985.12.ls 10/12 899 934 .. 1 36 [] 12.9 1.1 PF02985.12.ls 12/12 1048 1084 .. 1 36 [] 12.1 1.3 PF08623.1.fs 2/2 1086 1252 .. 1 196 [] 335.8 6.6e-98 PF08623.1.ls 1/1 1086 1252 .. 1 196 [] 337.7 1.9e-98 Alignments of top-scoring domains: PF02985.12.ls: domain 1 of 12, from 90 to 126: score 21.9, E = 0.0021 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ +++ ++lkll+D++ eV+ A+++Lg l++++ KIAA0829 90 DdSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 126 PF02985.12.ls: domain 3 of 12, from 217 to 253: score 15.8, E = 0.15 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++++++l +ll l++p VR+ ++ aLg l+ + KIAA0829 217 VnFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 253 PF02985.12.ls: domain 5 of 12, from 297 to 333: score 21.9, E = 0.0021 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++l++++pl++k +n +d+e Re +++a+ ++++ + KIAA0829 297 GeYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 333 PF02985.12.ls: domain 10 of 12, from 899 to 934: score 12.9, E = 1.1 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ l el ++l+++++p++eV+ aA +aLg+++ KIAA0829 899 SgQL-ELKSVILEAFSSPSEEVKSAASYALGSISVGN 934 PF02985.12.ls: domain 12 of 12, from 1048 to 1084: score 12.1, E = 1.3 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++l++ + +lk l+Dpd +VR+ A+ ++ + a + KIAA0829 1048 DpLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1084 PF08623.1.fs: domain 2 of 2, from 1086 to 1252: score 335.8, E = 6.6e-98 *->slIlplLneLLPlLyseTvVkkELIReVqMGPFKHvvDDGLelRKaA slI++lL+++LP Ly+eT+V+kELIReV+MGPFKH+vDDGL++RKaA KIAA0829 1086 SLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAA 1132 YEtlYtLLdtcdAvlktHlskidlpsfldrivlaGLsDsehDIKlLcllm +E++YtLLd+c l+++d+ +fl++ v++GL+D ++DIK+L++lm KIAA0829 1133 FECMYTLLDSC-------LDRLDIFEFLNH-VEDGLKD-HYDIKMLTFLM 1173 lskLvildpssvlvlnerLDVedtkpAvnsLaepLrktLskKlKdkavKQ l++L +l+ps+vl +rLD +L+epLr+t+++K+K+++vKQ KIAA0829 1174 LVRLSTLCPSAVL---QRLD---------RLVEPLRATCTTKVKANSVKQ 1211 ElEkqqElqRSalRvvasLsrkLdaaesqiplagknpkwtefvsdikkn< E+Ekq+El+RSa+R+va+L + ip+a k+p ++ef s+i n KIAA0829 1212 EFEKQDELKRSAMRAVAALLT--------IPEAEKSPLMSEFQSQISSN 1252 -* KIAA0829 - - PF08623.1.ls: domain 1 of 1, from 1086 to 1252: score 337.7, E = 1.9e-98 *->slIlplLneLLPlLyseTvVkkELIReVqMGPFKHvvDDGLelRKaA slI++lL+++LP Ly+eT+V+kELIReV+MGPFKH+vDDGL++RKaA KIAA0829 1086 SLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAA 1132 YEtlYtLLdtcdAvlktHlskidlpsfldrivlaGLsDsehDIKlLcllm +E++YtLLd+c l+++d+ +fl++ v++GL+D ++DIK+L++lm KIAA0829 1133 FECMYTLLDSC-------LDRLDIFEFLNH-VEDGLKD-HYDIKMLTFLM 1173 lskLvildpssvlvlnerLDVedtkpAvnsLaepLrktLskKlKdkavKQ l++L +l+ps+vl +rLD +L+epLr+t+++K+K+++vKQ KIAA0829 1174 LVRLSTLCPSAVL---QRLD---------RLVEPLRATCTTKVKANSVKQ 1211 ElEkqqElqRSalRvvasLsrkLdaaesqiplagknpkwtefvsdikkn< E+Ekq+El+RSa+R+va+L + ip+a k+p ++ef s+i n KIAA0829 1212 EFEKQDELKRSAMRAVAALLT--------IPEAEKSPLMSEFQSQISSN 1252 -* KIAA0829 - - //