hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14180502/chunk_1/iprscan-20080502-14180502.nocrc
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Query sequence: KIAA0830
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00477                                                 -19.2    1.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00477    1/1      85   290 ..     1   262 []   -19.2  1.4e-05

Alignments of top-scoring domains:
SM00477: domain 1 of 1, from 85 to 290: score -19.2, E = 1.4e-05
                   *->rheyvlsYnrstrmPlWvaehit.pesltsrkvvlvepqLvypktee
                       + +++ Y+ + r+P+++a   ++p++  +   +lvepq   p  + 
    KIAA0830    85    AERFATLYSTRDRIPVYSAFRAPrPAPGGAEQRWLVEPQIDDPNSN- 130  

                   aerksskFkpDtrip.eGkfraklsDYkgskvpsknGyDRGHLaPaadhk
                    e+  ++  + t+++++G+ +a + DY +s       y RG L+P  +++
    KIAA0830   131 LEEAINEAEAITSVNsLGSKQALNTDYLDS------DYQRGQLYPFSLSS 174  

                   fSeqeamddTFylSNmvPQygdGfNrgaW.ayLEdfl.Relta...eyng
                   +     + +TF l+N +P++++  ++  W  +L+ +++R lt + ++ ++
    KIAA0830   175 DV----QVATFTLTNSAPMTQS--FQERWyVNLHSLMdRALTPqcgSGED 218  

                   vyVvsGPlflpnydgdgkklipWldevkyqviGitkknvavPTHffkvil
                   +y+ +G++++ +y+ ++                    +vavP   +  ++
    KIAA0830   219 LYILTGTVPS-DYRVKD--------------------KVAVPEFVWLAAC 247  

                   aekaksetpelccealevaaFilPNepindespnhGkdESsWVEELLtnf
                   + + ++           + +F+  ++ ++d ++                 
    KIAA0830   248 CAVPGG---------GWAMGFV-KHTRDSDIIE----------------- 270  

                   rVpVdeiErlTGLvFfrnldra<-*
                    V V+++ +l  L F ++l ++   
    KIAA0830   271 DVMVKDLQKL--LPFNPQLFQN    290  

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