hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14244818/chunk_1/iprscan-20080502-14244818.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0834 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 280.2 3.8e-81 1 PF00069.15.fs Protein kinase domain 278.2 1.5e-80 1 PF07714.7.fs Protein tyrosine kinase 69.6 4.1e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 119 403 .. 1 287 [] 278.2 1.5e-80 PF07714.7.fs 1/1 119 264 .. 1 162 [. 69.6 4.1e-20 PF00069.15.ls 1/1 119 403 .. 1 287 [] 280.2 3.8e-81 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 119 to 403: score 278.2, E = 1.5e-80 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr ye+leklG+Gs++tVyk+k k +gk+VA+K+i++++e+ + ta+r KIAA0834 119 YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG-TPFTAIR 164 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E+++lk L+H NIv l+d+ ++k l lV+Ey+ dL+ y+ KIAA0834 165 --EASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHT-----DLCQYMD- 206 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv + g+l +d +k ++ Q+lrgl Y+H++ i+HRDLKP+N+L++++g+ KIAA0834 207 -KHPGGL--HPDNVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGE 253 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K+aDFGlA+ + +s++++ v+T+wY++P vllg+++y+t D KIAA0834 254 L----KLADFGLARAK-SvPSHtYSNEVVTLWYRPPDVLLGSTEYSTCLD 298 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +W++G+i+ e++ G F+g ++ dql++i+++lg+p+e +p +s KIAA0834 299 MWGVGCIFVEMIQGVAAFPGM--KDiQDQLERIFLVLGTPNEDTWPGVHS 346 isrse.fr...........r.l.pnlseeakdLikkcLnkDPskRltaee + +++ r + ++++ ++ ++ a dL +k+L+ P+ Rl+a+ KIAA0834 347 LPHFKpERftlyssknlrqAwNkLSYVNHAEDLASKLLQCSPKNRLSAQA 396 ilqHPwf<-* +l H++f KIAA0834 397 ALSHEYF 403 PF07714.7.fs: domain 1 of 1, from 119 to 264: score 69.6, E = 4.1e-20 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLk....eigase ++++kLGeG++ +VykG+ k ++ VA K+++ +++e g+ KIAA0834 119 YEKLEKLGEGSYATVYKGKSK----VNGKLVALKVIRlqeeE-GTPF 160 eeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEyme + +rEAs++k l +H NiV L+ ++ +e l +V+Ey++ KIAA0834 161 TA------IREASLLKGL-KHANIVLLHDIIHT-KET----LTLVFEYVH 198 gGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARN dL ++ kh ++ L f +Q +G++Y +++ + HRDL N KIAA0834 199 T-DLCQYMDKH--PGGLHPDNVKLFLFQLLRGLSYIHQRYILHRDLKPQN 245 cLVsenlvVKIsDFGLaRd<-* L+s+++ K +DFGLaR+ KIAA0834 246 LLISDTGELKLADFGLARA 264 PF00069.15.ls: domain 1 of 1, from 119 to 403: score 280.2, E = 3.8e-81 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr ye+leklG+Gs++tVyk+k k +gk+VA+K+i++++e+ + ta+r KIAA0834 119 YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG-TPFTAIR 164 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E+++lk L+H NIv l+d+ ++k l lV+Ey+ dL+ y+ KIAA0834 165 --EASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHT-----DLCQYMD- 206 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv + g+l +d +k ++ Q+lrgl Y+H++ i+HRDLKP+N+L++++g+ KIAA0834 207 -KHPGGL--HPDNVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGE 253 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K+aDFGlA+ + +s++++ v+T+wY++P vllg+++y+t D KIAA0834 254 L----KLADFGLARAK-SvPSHtYSNEVVTLWYRPPDVLLGSTEYSTCLD 298 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +W++G+i+ e++ G F+g ++ dql++i+++lg+p+e +p +s KIAA0834 299 MWGVGCIFVEMIQGVAAFPGM--KDiQDQLERIFLVLGTPNEDTWPGVHS 346 isrse.fr...........r.l.pnlseeakdLikkcLnkDPskRltaee + +++ r + ++++ ++ ++ a dL +k+L+ P+ Rl+a+ KIAA0834 347 LPHFKpERftlyssknlrqAwNkLSYVNHAEDLASKLLQCSPKNRLSAQA 396 ilqHPwf<-* +l H++f KIAA0834 397 ALSHEYF 403 //