hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14280743/chunk_1/iprscan-20080502-14280743.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0836 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06662.3.ls D-glucuronyl C5-epimerase C-terminus 462.0 6.9e-136 1 PF06662.3.fs D-glucuronyl C5-epimerase C-terminus 460.1 2.5e-135 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06662.3.fs 1/1 408 599 .. 1 206 [] 460.1 2.5e-135 PF06662.3.ls 1/1 408 599 .. 1 206 [] 462.0 6.9e-136 Alignments of top-scoring domains: PF06662.3.fs: domain 1 of 1, from 408 to 599: score 460.1, E = 2.5e-135 *->qdekrGGWrvpverplkegyknLspGWysAmaQGhgisvLaRAYelt qdek GGW+++v+r+l+eg+k+L+pGWysAmaQG++is+L+RAY lt KIAA0836 408 QDEK-GGWPIMVTRKLGEGFKSLEPGWYSAMAQGQAISTLVRAYLLT 453 GGDEeYLksAakAinlfkvpsekGGVkatfmgKnKSYyWYeEYpttppsy + D+++L+sA +A++++k++se++GVka+fm+K+ +WYeEYpttp+s+ KIAA0836 454 K-DHIFLNSALRATAPYKFLSEQHGVKAVFMNKH---DWYEEYPTTPSSF 499 VLNGFiysllGLYDlsqLeLmiDenktTgnarikeAleLykeGlkSLKam VLNGF+ysl+GLYDl ++t+g++++keA++Ly++G++SLKam KIAA0836 500 VLNGFMYSLIGLYDL---------KETAGEKLGKEARSLYERGMESLKAM 540 LplYDTGsWTyYDlrHlaLGvApNLArwdYHalHvnlLllLytitgDeiy LplYDTGs+T+YDlrH++LG+ApNLArwdYH++H+n+L+lL+ti++++i+ KIAA0836 541 LPLYDTGSGTIYDLRHFMLGIAPNLARWDYHTTHINQLQLLSTIDESPIF 590 kktaeRWks<-* k++++RWks KIAA0836 591 KEFVKRWKS 599 PF06662.3.ls: domain 1 of 1, from 408 to 599: score 462.0, E = 6.9e-136 *->qdekrGGWrvpverplkegyknLspGWysAmaQGhgisvLaRAYelt qdek GGW+++v+r+l+eg+k+L+pGWysAmaQG++is+L+RAY lt KIAA0836 408 QDEK-GGWPIMVTRKLGEGFKSLEPGWYSAMAQGQAISTLVRAYLLT 453 GGDEeYLksAakAinlfkvpsekGGVkatfmgKnKSYyWYeEYpttppsy + D+++L+sA +A++++k++se++GVka+fm+K+ +WYeEYpttp+s+ KIAA0836 454 K-DHIFLNSALRATAPYKFLSEQHGVKAVFMNKH---DWYEEYPTTPSSF 499 VLNGFiysllGLYDlsqLeLmiDenktTgnarikeAleLykeGlkSLKam VLNGF+ysl+GLYDl ++t+g++++keA++Ly++G++SLKam KIAA0836 500 VLNGFMYSLIGLYDL---------KETAGEKLGKEARSLYERGMESLKAM 540 LplYDTGsWTyYDlrHlaLGvApNLArwdYHalHvnlLllLytitgDeiy LplYDTGs+T+YDlrH++LG+ApNLArwdYH++H+n+L+lL+ti++++i+ KIAA0836 541 LPLYDTGSGTIYDLRHFMLGIAPNLARWDYHTTHINQLQLLSTIDESPIF 590 kktaeRWks<-* k++++RWks KIAA0836 591 KEFVKRWKS 599 //