hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14343808/chunk_1/iprscan-20080502-14343808.nocrc
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Query sequence: KIAA0840
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.ls F-box domain                                    51.3      3e-12   1
PF00646.23.fs F-box domain                                    49.3    4.7e-12   1
PF00560.23.ls Leucine Rich Repeat                             41.7    2.3e-09  10
PF00560.23.fs Leucine Rich Repeat                             24.3    1.4e-05   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1     144   191 ..     1    46 []    49.3  4.7e-12
PF00646.23.ls   1/1     144   191 ..     1    46 []    51.3    3e-12

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 144 to 191: score 49.3, E = 4.7e-12
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                       s+++LPd+ + +I+s+L++ +l+r+++V++rw++l+ +++lw+++ 
    KIAA0840   144    ASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPrLWRtIR 190  

                   l<-*
                   l   
    KIAA0840   191 L    191  

PF00646.23.ls: domain 1 of 1, from 144 to 191: score 51.3, E = 3e-12
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                       s+++LPd+ + +I+s+L++ +l+r+++V++rw++l+ +++lw+++ 
    KIAA0840   144    ASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPrLWRtIR 190  

                   l<-*
                   l   
    KIAA0840   191 L    191  

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