# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05077.fasta.huge -Q ../query/KIAA0842.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0842, 1020 aa
 vs ./tmplib.23663 library

1986485 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.1507+/-0.00841; mu= 2.8867+/- 0.571
 mean_var=284.7382+/-68.747, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.076007

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0356  ( 1058 res)   hh00006s1                  (1058)  240 40.7  0.0013


>>KIAA0356  ( 1058 res)   hh00006s1                       (1058 aa)
 initn: 257 init1: 199 opt: 240  Z-score: 156.9  bits: 40.7 E(): 0.0013
Smith-Waterman score: 270;  24.850% identity (49.299% similar) in 499 aa overlap (2-447:11-477)

                        10        20        30        40        50 
KIAA08          AMEPGEVKDRILENISLSVKKLQSYFAACEDEIPAIRNHDKVLQRLCEHLD
                 ..:  .   : ...  ::: ::. ... .    .. ..:   . .:  :.
KIAA03 VEMLSVVENGLDPQAAIPVIKKKLVGSVKALQKQYVSLDT---VVTSEDGDANTMCSALE
               10        20        30        40           50       

              60                            70        80        90 
KIAA08 HALLYGLQD----LSSG----------------YWVLVVHFTRREAIKQIEVLQHVATNL
        ....::.       .:                .: :.   :... :...: :  : :..
KIAA03 AVFIHGLHAKHIRAEAGGKRKKSAHQKPLPQPVFWPLLKAVTHKHIISELEHLTFVNTDV
        60        70        80        90       100       110       

             100       110       120       130       140       150 
KIAA08 GRSRAWLYLALNENSLESYLRLFQENLGLLHKYYVKNALVCSHDHLTLFLTLVSGLEFIR
       :: :::: ::::.. .: ::.:. .. . ::.::  .::. . ..  ..:....::  . 
KIAA03 GRCRAWLRLALNDGLMECYLKLLLQEQARLHEYYQPTALLRDAEEGEFLLSFLQGLTSLS
       120       130       140       150       160       170       

             160          170       180       190       200        
KIAA08 FELDLDAPYLD---LAPYMPDYYKPQYLLDFEDRLPSSVHGSDSLSLNSFNSVT----ST
       :::.  .  :.   :.:   .   :   ::     : :. :..    .:..:..    : 
KIAA03 FELSYKSAILNEWTLTPLALSGLCPLSELD-----PLSTSGAELQRKESLDSISHSSGSE
       180       190       200            210       220       230  

          210               220       230          240        250  
KIAA08 NLEWDDSA--------IAPSSEDYDFGDVFPAVPSVPSTD---WEDGDLT-DTVSGPRST
       ..:   :.        .. :: . : ..      :. : .    :.:. . :    : : 
KIAA03 DIEVHHSGHKIRRNQKLTASSLSLDTASSSQLSCSLNSDSCLLQENGSKSPDHCEEPMSC
            240       250       260       270       280       290  

            260         270       280       290       300       310
KIAA08 ASDLTSSKA--STRSPTQRQNPFNEEPAETVSSSDTTPVHTTSQEKEEAQALDPPDACTE
        ::: ...:  : ::  .    :..  ...:      :..  ::: :    .  :.:   
KIAA03 DSDLGTANAEDSDRSLQEVLLEFSKAQVNSV------PTNGLSQETE----IPTPQASLS
            300       310       320             330           340  

              320       330       340       350       360          
KIAA08 LEVIRVTKKKKIGKKKKSRSDEEASPLHPACSQKKCAKQGDGDSRNGSPSLGRDSP-DTM
       :.          : . ..    :: : .:  .:   . : ::  .   :     :: : .
KIAA03 LH----------GLNTSTYLHCEA-PAEPLPAQAASGTQ-DG-VHVQEPRPQAPSPLDLQ
                      350        360       370         380         

     370       380          390       400         410       420    
KIAA08 LASPQEEGEGPSSTTESSER---SEPGLLIPEMKDTSMERL--GQPLSKVIDQLNGQLD-
           .  :. ::::.  . :   .  ::   . .: .  .:  ..: :    .  .. : 
KIAA03 QPVESTSGQQPSSTVSETAREVGQGNGLQKAQAHDGAGLKLVVSSPTSPKNKSWISEDDF
     390       400       410       420       430       440         

                430       440       450       460       470        
KIAA08 --PST---WCSRAEPPDQSFRTGSPGDAPERPPLCDFSEGLSAPMDFYRFTVESPSTVTS
         ::      : .. :  :.: :.::. :                               
KIAA03 YRPSREQPLESASDHPIASYR-GTPGSRPGLHRHFSQEPRKNCSLGALDQACVPSPGRRQ
     450       460       470        480       490       500        




1020 residues in 1 query   sequences
1986485 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:21 2008 done: Thu Dec 18 15:18:22 2008
 Total Scan time:  0.690 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]