hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14375720/chunk_1/iprscan-20080502-14375720.nocrc
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Query sequence: KIAA0842
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.fs RUN domain                                     147.1    5.5e-42   1
PF02759.9.ls RUN domain                                     148.8    1.3e-41   1
PF00169.19.fs PH domain                                       66.3      1e-19   1
PF00169.19.ls PH domain                                       68.3    2.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/1      45   159 ..     1   174 []   147.1  5.5e-42
PF02759.9.ls   1/1      45   159 ..     1   174 []   148.8  1.3e-41
PF00169.19.fs   1/1     773   874 ..     1    92 []    66.3    1e-19
PF00169.19.ls   1/1     773   874 ..     1    92 []    68.3  2.2e-17

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 1, from 45 to 159: score 147.1, E = 5.5e-42
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LC++l++ l++GL+                          +ls+ +
    KIAA0842    45    RLCEHLDHALLYGLQ--------------------------DLSSGY 65   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                                          +vl+v++++++ ++qie L++     +
    KIAA0842    66 -----------------------WVLVVHFTRREAIKQIEVLQH-----V 87   

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +t++gr+R  AW++laLne+sL+syl+l++++ +ll+kyY +nAl++++ 
    KIAA0842    88 ATNLGRSR--AWLYLALNENSLESYLRLFQENLGLLHKYYVKNALVCSH- 134  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    +++ +++l+l+ gL++++F+Ldl+++   
    KIAA0842   135 -DHL-TLFLTLVSGLEFIRFELDLDAP    159  

PF02759.9.ls: domain 1 of 1, from 45 to 159: score 148.8, E = 1.3e-41
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LC++l++ l++GL+                          +ls+ +
    KIAA0842    45    RLCEHLDHALLYGLQ--------------------------DLSSGY 65   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                                          +vl+v++++++ ++qie L++     +
    KIAA0842    66 -----------------------WVLVVHFTRREAIKQIEVLQH-----V 87   

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +t++gr+R  AW++laLne+sL+syl+l++++ +ll+kyY +nAl++++ 
    KIAA0842    88 ATNLGRSR--AWLYLALNENSLESYLRLFQENLGLLHKYYVKNALVCSH- 134  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    +++ +++l+l+ gL++++F+Ldl+++   
    KIAA0842   135 -DHL-TLFLTLVSGLEFIRFELDLDAP    159  

PF00169.19.fs: domain 1 of 1, from 773 to 874: score 66.3, E = 1e-19
                   *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk.kkpkgs
                      ++keG L+ k +++  gk+ wk +++vL+++ L+ y d+++  p  s
    KIAA0842   773    ITKEGMLHYKAgtsylGKEHWKTCFVVLSNGILYQYPDRTdVIPLLS 819  

                   ipLsgiqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkai
                   +++ g q+  + + ++++r+++F+++ +dr +l+l+aese e+ eW++++
    KIAA0842   820 VNMGGEQCGGCRRAnttDRPHAFQVILsDRPCLELSAESEAEMAEWMQHL 869  

                   qsair<-*
                   ++a++   
    KIAA0842   870 CQAVS    874  

PF00169.19.ls: domain 1 of 1, from 773 to 874: score 68.3, E = 2.2e-17
                   *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk.kkpkgs
                      ++keG L+ k +++  gk+ wk +++vL+++ L+ y d+++  p  s
    KIAA0842   773    ITKEGMLHYKAgtsylGKEHWKTCFVVLSNGILYQYPDRTdVIPLLS 819  

                   ipLsgiqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkai
                   +++ g q+  + + ++++r+++F+++ +dr +l+l+aese e+ eW++++
    KIAA0842   820 VNMGGEQCGGCRRAnttDRPHAFQVILsDRPCLELSAESEAEMAEWMQHL 869  

                   qsair<-*
                   ++a++   
    KIAA0842   870 CQAVS    874  

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