hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14375720/chunk_1/iprscan-20080502-14375720.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0842
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00593                                                  86.9    2.5e-21   1
SM00233                                                  59.6      4e-13   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00593     1/1      94   157 ..     1    68 []    86.9  2.5e-21
SM00233     1/1     773   876 ..     1    82 []    59.6    4e-13

Alignments of top-scoring domains:
SM00593: domain 1 of 1, from 94 to 157: score 86.9, E = 2.5e-21
                   *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee
                      +rAw++laLne++L+s+L+l++++ +ll+kyY ++A+++s    +++
    KIAA0842    94    SRAWLYLALNENSLESYLRLFQENLGLLHKYYVKNALVCS----HDH 136  

                   geqlltlLqgLsaldfnlpvd<-*
                    +++ltl++gL+++ f+l++d   
    KIAA0842   137 LTLFLTLVSGLEFIRFELDLD    157  

SM00233: domain 1 of 1, from 773 to 876: score 59.6, E = 4e-13
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk...kpkgs
                      ++keG L+ k +++  +k++wk +++vL ng L+ y ++++  p  s
    KIAA0842   773    ITKEGMLHYKAgtsylgKeHWKTCFVVLSNGILYQYPDRtdvIPLLS 819  

                   ipLsgcsvre.p.........cFeivt.dr.tlllqAeseeereeWveal
                   +++ g ++    + +  +++++F+++ +dr++l+l+Aese e+ eW+++l
    KIAA0842   820 VNMGGEQCGGcRranttdrphAFQVILsDRpCLELSAESEAEMAEWMQHL 869  

                   qsaiaka<-*
                   ++a++k    
    KIAA0842   870 CQAVSKG    876  

//