hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14480980/chunk_1/iprscan-20080502-14480980.nocrc
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Query sequence: KIAA0848
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                            104.9    2.2e-28  12
PF00560.23.fs Leucine Rich Repeat                             85.4    1.6e-22  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   2/12    113   135 ..     1    24 []     9.9      3.6
PF00560.23.ls   4/12    161   183 ..     1    24 []    11.9      1.6
PF00560.23.ls   5/12    185   207 ..     1    24 []     9.6      4.3
PF00560.23.ls   6/12    208   231 ..     1    24 []     8.1      8.2
PF00560.23.ls   7/12    420   442 ..     1    24 []    10.6      2.7
PF00560.23.ls   8/12    444   466 ..     1    24 []    12.3      1.3
PF00560.23.fs   8/11    468   490 ..     1    24 []    12.5    0.022
PF00560.23.ls   9/12    468   490 ..     1    24 []    14.4     0.38
PF00560.23.ls  10/12    492   514 ..     1    24 []     8.9      5.8
PF00560.23.ls  11/12    516   538 ..     1    24 []    12.3      1.3

Alignments of top-scoring domains:
PF00560.23.ls: domain 2 of 12, from 113 to 135: score 9.9, E = 3.6
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      n  +++L++ N  l+ +++ +++++l   
    KIAA0848   113    NAVSINLGN-N-ALQ-DIQTGaFnGL    135  

PF00560.23.ls: domain 4 of 12, from 161 to 183: score 11.9, E = 1.6
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +Le+L  ++ N  + + ++s++++nl   
    KIAA0848   161    SLEYLQADY-N-VI-KRIESGaFrNL    183  

PF00560.23.ls: domain 5 of 12, from 185 to 207: score 9.6, E = 4.3
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++L L++ N  + + lp + ++     
    KIAA0848   185    KLRVLILND-N-LI-PMLPTNlFkAV    207  

PF00560.23.ls: domain 6 of 12, from 208 to 231: score 8.1, E = 8.2
                   *->nLeeLdLsgCNpsltgs.lpss.l.nl<-*
                      +L++LdL+g N +l +  +  + l++    
    KIAA0848   208    SLTHLDLRG-N-RL-KVlFYRGmLdHI    231  

PF00560.23.ls: domain 7 of 12, from 420 to 442: score 10.6, E = 2.7
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      n ++L+Ls+ N  ++ ++  s++ n+   
    KIAA0848   420    NAKKLYLSS-N-LIQ-KIYRSdFwNF    442  

PF00560.23.ls: domain 8 of 12, from 444 to 466: score 12.3, E = 1.3
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L  L+L++ N +++  ++++++ nl   
    KIAA0848   444    SLDLLHLGN-N-RIS-YVQDGaFiNL    466  

PF00560.23.fs: domain 8 of 11, from 468 to 490: score 12.5, E = 0.022
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++L L+g N  ++ +l ++ +++l   
    KIAA0848   468    NLKSLFLNG-N-DIE-KLTPGmFrGL    490  

PF00560.23.ls: domain 9 of 12, from 468 to 490: score 14.4, E = 0.38
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++L L+g N  ++ +l ++ +++l   
    KIAA0848   468    NLKSLFLNG-N-DIE-KLTPGmFrGL    490  

PF00560.23.ls: domain 10 of 12, from 492 to 514: score 8.9, E = 5.8
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L +L+++  N  + +++++ +++ +   
    KIAA0848   492    SLHYLYFEF-N-VI-REIQPAaFsLM    514  

PF00560.23.ls: domain 11 of 12, from 516 to 538: score 12.3, E = 1.3
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL+ L L++ N  l ++lp +++ +    
    KIAA0848   516    NLKLLFLNN-N-LL-RTLPTDaFaGT    538  

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