hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14480980/chunk_1/iprscan-20080502-14480980.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0848 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00369 162.7 3.8e-44 9 SM00082 68.0 1.2e-15 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00369 1/9 111 134 .. 1 24 [] 10.1 24 SM00369 2/9 135 158 .. 1 24 [] 14.5 7.1 SM00369 3/9 159 182 .. 1 24 [] 16.0 4.7 SM00369 4/9 183 206 .. 1 24 [] 24.7 0.013 SM00369 5/9 207 230 .. 1 24 [] 1.0 3.1e+02 SM00082 1/2 243 293 .. 1 55 [] 33.5 2.9e-05 SM00369 6/9 442 465 .. 1 24 [] 17.5 1.8 SM00369 7/9 466 489 .. 1 24 [] 30.1 0.0003 SM00369 8/9 490 513 .. 1 24 [] 16.7 3.3 SM00369 9/9 514 537 .. 1 24 [] 32.0 7.9e-05 SM00082 2/2 573 623 .. 1 55 [] 34.5 1.5e-05 Alignments of top-scoring domains: SM00369: domain 1 of 9, from 111 to 134: score 10.1, E = 24 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L n + +L+nN+L+ + gaF+g KIAA0848 111 LNNAVSINLGNNALQDIQTGAFNG 134 SM00369: domain 2 of 9, from 135 to 158: score 14.5, E = 7.1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L L++L+L+ N+L +++F g KIAA0848 135 LKILKRLYLHENKLDVFRNDTFLG 158 SM00369: domain 3 of 9, from 159 to 182: score 16.0, E = 4.7 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L+ L ++N ++++ +gaF++ KIAA0848 159 LESLEYLQADYNVIKRIESGAFRN 182 SM00369: domain 4 of 9, from 183 to 206: score 24.7, E = 0.013 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++Lr+L L++N + LP ++F KIAA0848 183 LSKLRVLILNDNLIPMLPTNLFKA 206 SM00369: domain 5 of 9, from 207 to 230: score 1.0, E = 3.1e+02 *->LpnLreLdLsnNqLtsLP.pgaFqg<-* ++L++LdL +N+L+ L +g++++ KIAA0848 207 -VSLTHLDLRGNRLKVLFyRGMLDH 230 SM00082: domain 1 of 2, from 243 to 293: score 33.5, E = 2.9e-05 *->NPfnCDCeLrwLlrwleaqnnealqdpvs..slrCasPeslrGqpll NP+nC+Ce+ L+ wle +++ ++ ++++C++P +++G+ l+ KIAA0848 243 NPWNCTCEIVQLKSWLER-----IPYTALvgDITCETPFHFHGKDLR 284 lllpsefsCp<-* + + Cp KIAA0848 285 EIRK-TELCP 293 SM00369: domain 6 of 9, from 442 to 465: score 17.5, E = 1.8 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L L+L+nN+++ + +gaF + KIAA0848 442 FSSLDLLHLGNNRISYVQDGAFIN 465 SM00369: domain 7 of 9, from 466 to 489: score 30.1, E = 0.0003 *->LpnLreLdLsnNqLtsLPpgaFqg<-* LpnL++L L++N ++ L pg+F+g KIAA0848 466 LPNLKSLFLNGNDIEKLTPGMFRG 489 SM00369: domain 8 of 9, from 490 to 513: score 16.7, E = 3.3 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L L+ ++N ++++ p aF+ KIAA0848 490 LQSLHYLYFEFNVIREIQPAAFSL 513 SM00369: domain 9 of 9, from 514 to 537: score 32.0, E = 7.9e-05 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +pnL+ L L+nN L++LP +aF+g KIAA0848 514 MPNLKLLFLNNNLLRTLPTDAFAG 537 SM00082: domain 2 of 2, from 573 to 623: score 34.5, E = 1.5e-05 *->NPfnCDCeLrwLlrwleaqnnealqdpvs.slrCasPeslrGqplll NP++C+C+L ++++w+e + +v+++++C sPe l + +++ KIAA0848 573 NPWDCTCDLVPFKQWIET----ISSVSVVgDVLCRSPENLTHRDVRT 615 llpsefsCp<-* e Cp KIAA0848 616 IEL-EVLCP 623 //