hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14495103/chunk_1/iprscan-20080502-14495103.nocrc
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Query sequence: KIAA0849
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01302.15.ls CAP-Gly domain                                 247.6    2.3e-71   3
PF01302.15.fs CAP-Gly domain                                 241.9    1.3e-69   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01302.15.fs   1/3     134   210 ..     1    74 []    83.1  1.9e-22
PF01302.15.ls   1/3     134   210 ..     1    74 []    85.0  2.1e-22
PF01302.15.fs   2/3     239   310 ..     1    74 []    71.5  3.1e-19
PF01302.15.ls   2/3     239   310 ..     1    74 []    73.4  6.5e-19
PF01302.15.fs   3/3     476   544 ..     1    74 []    87.3  1.3e-23
PF01302.15.ls   3/3     476   544 ..     1    74 []    89.2  1.2e-23

Alignments of top-scoring domains:
PF01302.15.fs: domain 1 of 3, from 134 to 210: score 83.1, E = 1.9e-22
                   *->iGsRVevgg.ggeedrrGtVRYvGetdfapGtn.iWvGVELDePlrG
                      +G+ V+v  ++gee ++G+VR+ G++  +  +++i+ GVEL+e+ rG
    KIAA0849   134    VGCPVKVQLrSGEEKFPGVVRFRGPLLAERTVSgIFFGVELLEEGRG 180  

                   KN..DGsvkGvrYFqCegpkyGiFvrpskve<-*
                      +DG ++G+++FqC+ + +G+Fv ++k+e   
    KIAA0849   181 QGftDGVYQGKQLFQCD-EDCGVFVALDKLE    210  

PF01302.15.ls: domain 1 of 3, from 134 to 210: score 85.0, E = 2.1e-22
                   *->iGsRVevgg.ggeedrrGtVRYvGetdfapGtn.iWvGVELDePlrG
                      +G+ V+v  ++gee ++G+VR+ G++  +  +++i+ GVEL+e+ rG
    KIAA0849   134    VGCPVKVQLrSGEEKFPGVVRFRGPLLAERTVSgIFFGVELLEEGRG 180  

                   KN..DGsvkGvrYFqCegpkyGiFvrpskve<-*
                      +DG ++G+++FqC+ + +G+Fv ++k+e   
    KIAA0849   181 QGftDGVYQGKQLFQCD-EDCGVFVALDKLE    210  

PF01302.15.fs: domain 2 of 3, from 239 to 310: score 71.5, E = 3.1e-19
                   *->iGsRVevggggeedrrGtVRYvGetdfap..GtniWvGVELDePlrG
                      i+sRV +++g e+++ GtV ++  ++++++ G+  +vGV++D+P+ G
    KIAA0849   239    INSRVSLKVG-ETIESGTVIFCDVLPGKEslGY--FVGVDMDNPI-G 281  

                   KNDGsvkGvrY..FqCegpkyGiFvrpskve<-*
                   ++DG+++Gv++ +F C  + + i+++++++    
    KIAA0849   282 NWDGRFDGVQLcsFACV-EST-ILLHINDII    310  

PF01302.15.ls: domain 2 of 3, from 239 to 310: score 73.4, E = 6.5e-19
                   *->iGsRVevggggeedrrGtVRYvGetdfap..GtniWvGVELDePlrG
                      i+sRV +++g e+++ GtV ++  ++++++ G+  +vGV++D+P+ G
    KIAA0849   239    INSRVSLKVG-ETIESGTVIFCDVLPGKEslGY--FVGVDMDNPI-G 281  

                   KNDGsvkGvrY..FqCegpkyGiFvrpskve<-*
                   ++DG+++Gv++ +F C  + + i+++++++    
    KIAA0849   282 NWDGRFDGVQLcsFACV-EST-ILLHINDII    310  

PF01302.15.fs: domain 3 of 3, from 476 to 544: score 87.3, E = 1.3e-23
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +Gs  ev+   +++++G++R++G++++ + +   +G+EL+++++G+ 
    KIAA0849   476    VGSLAEVKE--NPPFYGVIRWIGQPPGLNEV--LAGLELEDECAGCT 518  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   DG+++G+rYF+C   k+++Fv++ +++   
    KIAA0849   519 DGTFRGTRYFTCA-LKKALFVKLKSCR    544  

PF01302.15.ls: domain 3 of 3, from 476 to 544: score 89.2, E = 1.2e-23
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +Gs  ev+   +++++G++R++G++++ + +   +G+EL+++++G+ 
    KIAA0849   476    VGSLAEVKE--NPPFYGVIRWIGQPPGLNEV--LAGLELEDECAGCT 518  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   DG+++G+rYF+C   k+++Fv++ +++   
    KIAA0849   519 DGTFRGTRYFTCA-LKKALFVKLKSCR    544  

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