hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14512888/chunk_1/iprscan-20080502-14512888.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0850 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 351.4 1.3e-102 6 PF01344.15.fs Kelch motif 339.7 4.5e-99 6 PF07646.5.ls Kelch motif 151.2 2.5e-42 6 PF07646.5.fs Kelch motif 140.0 6e-39 6 PF00651.21.ls BTB/POZ domain 100.2 5.6e-27 1 PF00651.21.fs BTB/POZ domain 98.4 5.7e-27 1 PF07707.5.fs BTB And C-terminal Kelch 38.7 8.4e-10 1 PF07707.5.ls BTB And C-terminal Kelch 13.7 6.5e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 24 131 .. 1 135 [] 100.2 5.6e-27 PF00651.21.fs 1/1 24 131 .. 1 135 [] 98.4 5.7e-27 PF07707.5.ls 1/1 136 235 .. 1 103 [] 13.7 6.5e-05 PF07707.5.fs 1/1 136 187 .. 1 52 [. 38.7 8.4e-10 PF07646.5.fs 1/6 359 404 .. 1 54 [] 19.9 0.00015 PF07646.5.ls 1/6 359 404 .. 1 54 [] 21.8 0.0023 PF01344.15.fs 1/6 359 404 .. 1 45 [] 59.4 4.7e-16 PF01344.15.ls 1/6 359 404 .. 1 45 [] 61.4 2.7e-15 PF07646.5.ls 2/6 406 452 .. 1 54 [] 25.7 0.00016 PF01344.15.fs 2/6 406 452 .. 1 45 [] 40.9 8.6e-11 PF07646.5.fs 2/6 406 452 .. 1 54 [] 23.8 1.3e-05 PF01344.15.ls 2/6 406 452 .. 1 45 [] 42.9 1e-09 PF07646.5.fs 3/6 454 501 .. 1 54 [] 21.2 6.8e-05 PF07646.5.ls 3/6 454 501 .. 1 54 [] 23.1 0.00095 PF01344.15.fs 3/6 454 501 .. 1 45 [] 56.0 4.3e-15 PF01344.15.ls 3/6 454 501 .. 1 45 [] 58.0 2.8e-14 PF07646.5.ls 4/6 503 548 .. 1 54 [] 28.9 1.6e-05 PF01344.15.ls 4/6 503 548 .. 1 45 [] 63.7 5.5e-16 PF07646.5.fs 4/6 503 548 .. 1 54 [] 27.0 1.7e-06 PF01344.15.fs 4/6 503 548 .. 1 45 [] 61.7 1e-16 PF01344.15.fs 5/6 550 595 .. 1 45 [] 64.2 2.1e-17 PF07646.5.fs 5/6 550 595 .. 1 54 [] 22.3 3.4e-05 PF01344.15.ls 5/6 550 595 .. 1 45 [] 66.2 9.8e-17 PF07646.5.ls 5/6 550 595 .. 1 54 [] 24.1 0.00045 PF07646.5.fs 6/6 597 637 .. 1 49 [. 25.8 3.6e-06 PF01344.15.fs 6/6 597 637 .. 1 40 [. 57.5 1.7e-15 PF01344.15.ls 6/6 597 642 .. 1 45 [] 59.1 1.3e-14 PF07646.5.ls 6/6 597 642 .. 1 54 [] 27.7 3.8e-05 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 24 to 131: score 100.2, E = 5.6e-27 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln+lrk+g++cDV L+v g++ AH+avLa+cSpY ++ KIAA0850 24 LNALRKSGQFCDVRLQVC--------GHEMLAHRAVLACCSPYLFEI 62 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F+++ + + +s ++ +d +pe++e lL+++Yt+ l + KIAA0850 63 FNSD------SDPHGIS-HVKFDDLNPEAVEVLLNYAYTAQLKAD----- 100 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +e v d+ +aA ++l++++++++C ++l+ KIAA0850 101 ------KELVKDVYSAA-KKLKMDRVKQVCGDYLLSRM 131 PF00651.21.fs: domain 1 of 1, from 24 to 131: score 98.4, E = 5.7e-27 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln+lrk+g++cDV L+v g++ AH+avLa+cSpY ++ KIAA0850 24 LNALRKSGQFCDVRLQVC--------GHEMLAHRAVLACCSPYLFEI 62 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F+++ + + +s ++ +d +pe++e lL+++Yt+ l + KIAA0850 63 FNSD------SDPHGIS-HVKFDDLNPEAVEVLLNYAYTAQLKAD----- 100 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +e v d+ +aA ++l++++++++C ++l+ KIAA0850 101 ------KELVKDVYSAA-KKLKMDRVKQVCGDYLLSRM 131 PF07707.5.ls: domain 1 of 1, from 136 to 235: score 13.7, E = 6.5e-05 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ r+fA +g ++L++++d++i+++ l+++++eEFl L+ +L KIAA0850 136 CISYRNFASCMGDSRLLNKVDAYIQEHLLQISEEEEFLKLPRLKLEV 182 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky L+ D + ps +++ v++Wv+ + + l eL++ V s + KIAA0850 183 MLE-DNVCLPSNGKLYTKVINWVQRSIWENGDSLEELMEEVQTLYYSAD- 230 Llevve<-* + + KIAA0850 231 -HKLLD 235 PF07707.5.fs: domain 1 of 1, from 136 to 187: score 38.7, E = 8.4e-10 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ r+fA +g ++L++++d++i+++ l+++++eEFl L+ +L KIAA0850 136 CISYRNFASCMGDSRLLNKVDAYIQEHLLQISEEEEFLKLPRLKLEV 182 lLssD<-* L+++ KIAA0850 183 MLEDN 187 PF07646.5.fs: domain 1 of 6, from 359 to 404: score 19.9, E = 0.00015 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++ ++gkl+ GG+ n e ++++ +++p t +W KIAA0850 359 ARSGLGTAEMNGKLIAAGGY--------NREECLRTVECYNPHTDHW 397 eklpalp<-* + l+++ KIAA0850 398 SFLAPMR 404 PF07646.5.ls: domain 1 of 6, from 359 to 404: score 21.8, E = 0.0023 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++ ++gkl+ GG+ n e ++++ +++p t +W KIAA0850 359 ARSGLGTAEMNGKLIAAGGY--------NREECLRTVECYNPHTDHW 397 eklpalp<-* + l+++ KIAA0850 398 SFLAPMR 404 PF01344.15.fs: domain 1 of 6, from 359 to 404: score 59.4, E = 4.7e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rsg g + ++gk+ ++GGy+ +++l++ve+Y+p t+ W++l++m+ KIAA0850 359 ARSGLGTAEMNGKLIAAGGYNReECLRTVECYNPHTDHWSFLAPMR 404 -* KIAA0850 - - PF01344.15.ls: domain 1 of 6, from 359 to 404: score 61.4, E = 2.7e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rsg g + ++gk+ ++GGy+ +++l++ve+Y+p t+ W++l++m+ KIAA0850 359 ARSGLGTAEMNGKLIAAGGYNReECLRTVECYNPHTDHWSFLAPMR 404 -* KIAA0850 - - PF07646.5.ls: domain 2 of 6, from 406 to 452: score 25.7, E = 0.00016 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ ++v+ g+lyvvGGs +++ +d+s+ + +d ++ W KIAA0850 406 PRARFQMAVLMGQLYVVGGS-----NGHSDDLSCGEM--YDSNIDDW 445 eklpalp<-* ++p l KIAA0850 446 IPVPELR 452 PF01344.15.fs: domain 2 of 6, from 406 to 452: score 40.9, E = 8.6e-11 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp pR+++ ++vl g++Yv+GG++g++ l++ e+YD + W ++p+++ KIAA0850 406 PRARFQMAVLMGQLYVVGGSNGhsDDLSCGEMYDSNIDDWIPVPELR 452 <-* KIAA0850 - - PF07646.5.fs: domain 2 of 6, from 406 to 452: score 23.8, E = 1.3e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ ++v+ g+lyvvGGs +++ +d+s+ + +d ++ W KIAA0850 406 PRARFQMAVLMGQLYVVGGS-----NGHSDDLSCGEM--YDSNIDDW 445 eklpalp<-* ++p l KIAA0850 446 IPVPELR 452 PF01344.15.ls: domain 2 of 6, from 406 to 452: score 42.9, E = 1e-09 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp pR+++ ++vl g++Yv+GG++g++ l++ e+YD + W ++p+++ KIAA0850 406 PRARFQMAVLMGQLYVVGGSNGhsDDLSCGEMYDSNIDDWIPVPELR 452 <-* KIAA0850 - - PF07646.5.fs: domain 3 of 6, from 454 to 501: score 21.2, E = 6.8e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ ++gkly+vGGs + +g +++ +d+ +dp t+ W KIAA0850 454 NRCNAGVCALNGKLYIVGGS----DPYGQKGLKNCDV--FDPVTKLW 494 eklpalp<-* + +++l KIAA0850 495 TSCAPLN 501 PF07646.5.ls: domain 3 of 6, from 454 to 501: score 23.1, E = 0.00095 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ ++gkly+vGGs + +g +++ +d+ +dp t+ W KIAA0850 454 NRCNAGVCALNGKLYIVGGS----DPYGQKGLKNCDV--FDPVTKLW 494 eklpalp<-* + +++l KIAA0850 495 TSCAPLN 501 PF01344.15.fs: domain 3 of 6, from 454 to 501: score 56.0, E = 4.3e-15 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R++agv++l+gk+Y++GG+d+ ++ l++++v+Dp+t+ Wt ++++ KIAA0850 454 NRCNAGVCALNGKLYIVGGSDPygqKGLKNCDVFDPVTKLWTSCAPL 500 p<-* + KIAA0850 501 N 501 PF01344.15.ls: domain 3 of 6, from 454 to 501: score 58.0, E = 2.8e-14 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R++agv++l+gk+Y++GG+d+ ++ l++++v+Dp+t+ Wt ++++ KIAA0850 454 NRCNAGVCALNGKLYIVGGSDPygqKGLKNCDVFDPVTKLWTSCAPL 500 p<-* + KIAA0850 501 N 501 PF07646.5.ls: domain 4 of 6, from 503 to 548: score 28.9, E = 1.6e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++a++ +gg ly++GG+ + ++++ +++pe n+W KIAA0850 503 RRHQSAVCELGGYLYIIGGA--------ESWNCLNTVERYNPENNTW 541 eklpalp<-* + ++++ KIAA0850 542 TLIAPMN 548 PF01344.15.ls: domain 4 of 6, from 503 to 548: score 63.7, E = 5.5e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+ +v+ l+g++Y+iGG + ++ln+ve+Y+pe+ntWt +++m+ KIAA0850 503 RRHQSAVCELGGYLYIIGGAESwNCLNTVERYNPENNTWTLIAPMN 548 -* KIAA0850 - - PF07646.5.fs: domain 4 of 6, from 503 to 548: score 27.0, E = 1.7e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++a++ +gg ly++GG+ + ++++ +++pe n+W KIAA0850 503 RRHQSAVCELGGYLYIIGGA--------ESWNCLNTVERYNPENNTW 541 eklpalp<-* + ++++ KIAA0850 542 TLIAPMN 548 PF01344.15.fs: domain 4 of 6, from 503 to 548: score 61.7, E = 1e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+ +v+ l+g++Y+iGG + ++ln+ve+Y+pe+ntWt +++m+ KIAA0850 503 RRHQSAVCELGGYLYIIGGAESwNCLNTVERYNPENNTWTLIAPMN 548 -* KIAA0850 - - PF01344.15.fs: domain 5 of 6, from 550 to 595: score 64.2, E = 2.1e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+gagv+vl+gk++v+GG+dg+ + ++ve+YDp+ n+W+++ +m+ KIAA0850 550 ARRGAGVAVLNGKLFVCGGFDGsHAISCVEMYDPTRNEWKMMGNMT 595 -* KIAA0850 - - PF07646.5.fs: domain 5 of 6, from 550 to 595: score 22.3, E = 3.4e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r + ++v++gkl+v+GG+ +g++++s + +dp n+W KIAA0850 550 ARRGAGVAVLNGKLFVCGGF--------DGSHAISCVEMYDPTRNEW 588 eklpalp<-* + + + KIAA0850 589 KMMGNMT 595 PF01344.15.ls: domain 5 of 6, from 550 to 595: score 66.2, E = 9.8e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+gagv+vl+gk++v+GG+dg+ + ++ve+YDp+ n+W+++ +m+ KIAA0850 550 ARRGAGVAVLNGKLFVCGGFDGsHAISCVEMYDPTRNEWKMMGNMT 595 -* KIAA0850 - - PF07646.5.ls: domain 5 of 6, from 550 to 595: score 24.1, E = 0.00045 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r + ++v++gkl+v+GG+ +g++++s + +dp n+W KIAA0850 550 ARRGAGVAVLNGKLFVCGGF--------DGSHAISCVEMYDPTRNEW 588 eklpalp<-* + + + KIAA0850 589 KMMGNMT 595 PF07646.5.fs: domain 6 of 6, from 597 to 637: score 25.8, E = 3.6e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ ++++g+ +y vGG+ +g+e+++++ v+++e+n+W KIAA0850 597 PRSNAGIATVGNTIYAVGGF--------DGNEFLNTVEVYNLESNEW 635 ek<-* ++ KIAA0850 636 SP 637 PF01344.15.fs: domain 6 of 6, from 597 to 637: score 57.5, E = 1.7e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtk<-* pRs+ag++++++ iY++GG+dg+++ln+vevY++e+n+W++ KIAA0850 597 PRSNAGIATVGNTIYAVGGFDGnEFLNTVEVYNLESNEWSP 637 PF01344.15.ls: domain 6 of 6, from 597 to 642: score 59.1, E = 1.3e-14 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs+ag++++++ iY++GG+dg+++ln+vevY++e+n+W++ + KIAA0850 597 PRSNAGIATVGNTIYAVGGFDGnEFLNTVEVYNLESNEWSPYTKIF 642 -* KIAA0850 - - PF07646.5.ls: domain 6 of 6, from 597 to 642: score 27.7, E = 3.8e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ ++++g+ +y vGG+ +g+e+++++ v+++e+n+W KIAA0850 597 PRSNAGIATVGNTIYAVGGF--------DGNEFLNTVEVYNLESNEW 635 eklpalp<-* ++ +++ KIAA0850 636 SPYTKIF 642 //