hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14544956/chunk_1/iprscan-20080502-14544956.nocrc
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Query sequence: KIAA0852
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF07496.5.fs CW-type Zinc Finger                            85.1    6.8e-25   1
PF07496.5.ls CW-type Zinc Finger                            87.0    5.2e-23   1
PF02518.16.fs Histidine kinase-, DNA gyrase B-, and HSP90    21.3    1.3e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF02518.16.fs   1/1       9    89 ..     1    94 [.    21.3  1.3e-05
PF07496.5.fs   1/1     479   528 ..     1    55 []    85.1  6.8e-25
PF07496.5.ls   1/1     479   528 ..     1    55 []    87.0  5.2e-23

Alignments of top-scoring domains:
PF02518.16.fs: domain 1 of 1, from 9 to 89: score 21.3, E = 1.3e-05
                   *->gdedrLrqvlsNLldNAikhapaggeitvrlerdg...drlritVeD
                      +  ++L  +l +L+dNA ++ ++  +i++ +er+++ ++++ +   D
    KIAA0852     9    TTHEFLFGALAELVDNARDADAT--RIDIYAERREdlrGGFMLCFLD 53   

                   nGpGIppehkisaedleriFepFyrtdg.psaesladsr.rkigGGLtGL
                   +G G++p       d + + + + +++ +p         + +ig+   G 
    KIAA0852    54 DGAGMDP------SDAASVIQFGKSAKRtP--------EsTQIGQ--YGN 87   

                   GL<-*
                   GL   
    KIAA0852    88 GL    89   

PF07496.5.fs: domain 1 of 1, from 479 to 528: score 85.1, E = 6.8e-25
                   *->pyWVQCdPkClKWRrLPkeinyedIREkllpdkWfCsmNpwdkeyns
                      p+++QCd +ClKWR+LP++++ +   Ek++pd+W+CsmNp d+e+++
    KIAA0852   479    PTTIQCD-LCLKWRTLPFQLSSV---EKDYPDTWVCSMNP-DPEQDR 520  

                   CedpEele<-*
                   Ce++E ++   
    KIAA0852   521 CEASEQKQ    528  

PF07496.5.ls: domain 1 of 1, from 479 to 528: score 87.0, E = 5.2e-23
                   *->pyWVQCdPkClKWRrLPkeinyedIREkllpdkWfCsmNpwdkeyns
                      p+++QCd +ClKWR+LP++++ +   Ek++pd+W+CsmNp d+e+++
    KIAA0852   479    PTTIQCD-LCLKWRTLPFQLSSV---EKDYPDTWVCSMNP-DPEQDR 520  

                   CedpEele<-*
                   Ce++E ++   
    KIAA0852   521 CEASEQKQ    528  

//