hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15050498/chunk_1/iprscan-20080502-15050498.nocrc
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Query sequence: KIAA0858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          25.7    1.5e-06   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          21.0      0.004   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.ls   1/1     929  1009 ..     1    86 []    21.0    0.004
PF00595.14.fs   1/1     942   984 ..    13    62 ..    25.7  1.5e-06

Alignments of top-scoring domains:
PF00595.14.ls: domain 1 of 1, from 929 to 1009: score 21.0, E = 0.004
                   *->evtleke.dkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGr
                       +++   + k   +Gf+ik   +     gifv++v +Gs+a   +  
    KIAA0858   929    RISINQTpGKSLDFGFTIKWDIP-----GIFVASVEAGSPAEFSQ-- 968  

                   LqaGDqIlsvNGqdle...nlsheeavlalkgsggsevtLtvl<-*
                   Lq++D I+++N+++++ +++ + eea++  +++g   + + v+   
    KIAA0858   969 LQVDDEIIAINNTKFSyndSKEWEEAMAKAQETG--HLVMDVR    1009 

PF00595.14.fs: domain 1 of 1, from 942 to 984: score 25.7, E = 1.5e-06
                   *->lGfsikggsdkgadkgifvsevlpGsgaAeagGrLqaGDqIlsvNGq
                      +Gf+ik   +     gifv++v +Gs+a   +  Lq++D I+++N++
    KIAA0858   942    FGFTIKWDIP-----GIFVASVEAGSPAEFSQ--LQVDDEIIAINNT 981  

                   dle<-*
                   +++   
    KIAA0858   982 KFS    984  

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