hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15050498/chunk_1/iprscan-20080502-15050498.nocrc
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Query sequence: KIAA0858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                  45.5    7.1e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1     940  1012 ..     1    80 []    45.5  7.1e-09

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 940 to 1012: score 45.5, E = 7.1e-09
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                        +Gf+i+ + +gifv+sv++GspA+ +       L+v D+I+++N+
    KIAA0858   940    LDFGFTIKWdipGIFVASVEAGSPAEFSQ------LQVDDEIIAINN 980  

                   etsve...gltheeavdllkkaggggvGekvtLtvlRgg<-*
                    t  + ++++  eea++  +++g      ++++ v+R g   
    KIAA0858   981 -TKFSyndSKEWEEAMAKAQETG------HLVMDVRRYG    1012 

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