hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15100651/chunk_1/iprscan-20080502-15100651.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0861 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 174.9 7.7e-48 1 SM00150 48.8 7e-10 1 SM00233 40.6 2.1e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00150 1/1 191 296 .. 1 104 [] 48.8 7e-10 SM00325 1/1 491 689 .. 1 211 [] 174.9 7.7e-48 SM00233 1/1 709 824 .. 1 82 [] 40.6 2.1e-07 Alignments of top-scoring domains: SM00150: domain 1 of 1, from 191 to 296: score 48.8, E = 7e-10 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q+F +d ++ l++ +++++ + +g +++ +ve+ lk+H+ le KIAA0861 191 QHFEHDFCKAKLALDNLLeEQAEFTGIG--DSVMHVEQILKEHKKLE 235 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWe....eL + ++ e+ + l g+qLi++ +h++a++I+ r+ el++ ++ + KIAA0861 236 EKSQESLEKAQLLALVGDQLIQS-HHYAADAIRPRCVELRHLCDdfinGN 284 lelaeeRrqkLe<-* +++++ ++ Le KIAA0861 285 KKKWDILGKSLE 296 SM00325: domain 1 of 1, from 491 to 689: score 174.9, E = 7.7e-48 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl +++ Ll+TE+ Y+++ k ++++++ p++ + ++l+p++ ++ ++ l KIAA0861 491 IIRDLLETEEIYIKEIKSIIDGYITPMDFIWLKHLIPDVLQNNKDFL 537 FgpNieeiyefH.rrFLdeLeerveewllskdlKsernsviedsgerigd Fg Ni e+yefH+r+FL+eLe++ e+ +e++++ KIAA0861 538 FG-NIRELYEFHnRTFLKELEKCAEN------------------PELLAH 568 vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies +Flk +e+++iY +Y++n p+a +++++ + +++a++ +++++ KIAA0861 569 CFLKR---KEDLQIYFKYHKNLPRARAIWQE-C---QDCAYFGVCQRQLD 611 kpncrsksearltLeslLikPvQRltkYpLLLkellkhtpp......... + +l+L +L+ P QRl kY++LLk ll+ +p++ + ++++ KIAA0861 612 H---------NLPLFKYLKGPSQRLIKYQMLLKGLLDFESPedmeidpge 652 .............dhedredLkkAleaikelasqvNe<-* +++ ++++++++d+ +L++Al++i++l+++++ KIAA0861 653 lggsakdgpkrtkDSAFSTELQQALAVIEDLIKSCEL 689 SM00233: domain 1 of 1, from 709 to 824: score 40.6, E = 2.1e-07 *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk.. ++++G ++++ ++++ + ++ + + +r +Lf++ ++++k + + KIAA0861 709 LLLHGPFSVWTihkdrykmkdliRfKPSQRQIYLFERGIVFCKIRme 755 ..........kpkgsipLsgcsvre.p.....cFeivt.dr..tlllqAe +++++ +++ + k+ + L ++s+r +++++ Fei ++++ + ++lqA KIAA0861 756 pgdqglsphySFKKAMKLMTLSIRQlGrgshrKFEIASrNGleKYILQAA 805 seeereeWvealqsaiaka<-* s+e r++W++ + +++ ++ KIAA0861 806 SKEIRDCWFSEISKLLMEQ 824 //