hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15132685/chunk_1/iprscan-20080502-15132685.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0863 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 87.2 1.9e-21 8 SM00389 30.2 0.00022 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/8 123 146 .. 1 23 [] 13.5 9.5 SM00355 2/8 156 178 .. 1 23 [] 0.5 2.8e+02 SM00355 3/8 205 228 .. 1 23 [] 15.0 6.5 SM00355 4/8 265 290 .. 1 23 [] 15.3 5.9 SM00355 5/8 744 766 .. 1 23 [] 12.7 12 SM00355 6/8 797 818 .. 1 23 [] 2.4 1.7e+02 SM00355 7/8 820 843 .. 1 23 [] 14.5 7.2 SM00355 8/8 925 948 .. 1 23 [] 13.3 10 SM00389 1/1 1093 1155 .. 1 63 [] 30.2 0.00022 Alignments of top-scoring domains: SM00355: domain 1 of 8, from 123 to 146: score 13.5, E = 9.5 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C + C++s++ +++k+H+ + H KIAA0863 123 YCCGL-CKYSTKVLtSFKNHLHrYH 146 SM00355: domain 2 of 8, from 156 to 178: score 0.5, E = 2.8e+02 *->ykCpigCgksfssk.aLkrHmr.vH<-* Cp C + s+++ rH r H KIAA0863 156 IPCPN-CVFA-SQPkVVGRHFRmFH 178 SM00355: domain 3 of 8, from 205 to 228: score 15.0, E = 6.5 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++s + + ++k+H+ H KIAA0863 205 FTCLK-CNFSNTLYySMKKHVLvAH 228 SM00355: domain 4 of 8, from 265 to 290: score 15.3, E = 5.9 *->ykCpigCgksfssk.aLkrHmr...vH<-* y C++ C+ ss++aL H+ ++++H KIAA0863 265 YYCKK-CNANASSQdALMYHILtsdIH 290 SM00355: domain 5 of 8, from 744 to 766: score 12.7, E = 12 *->ykCpigCgksfsskaLkrHmr.vH<-* +Cp+ C++ f+s ++ Hm H KIAA0863 744 KTCPV-CNELFPSNVYQVHMEvAH 766 SM00355: domain 6 of 8, from 797 to 818: score 2.4, E = 1.7e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* +C C+ + s+++L++H+ +H KIAA0863 797 VRCLS-CK-CLVSEeELIHHLLMH 818 SM00355: domain 7 of 8, from 820 to 843: score 14.5, E = 7.2 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C + C+ +f++ + L +H r++H KIAA0863 820 LGCLF-CPCTFHDIkGLSEHSRnRH 843 SM00355: domain 8 of 8, from 925 to 948: score 13.3, E = 10 *->ykCpigCgksfssk.aLkrHmr.vH<-* +Cp+ C f + +a++ H++++H KIAA0863 925 STCPF-CFGPFVTTeAYELHLKeRH 948 SM00389: domain 1 of 1, from 1093 to 1155: score 30.2, E = 0.00022 *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv ++++ + +e ++L+++F+k pYPs++e+e L+ + V KIAA0863 1093 PKKYEGRSYEEKKQFLKDYFHKKPYPSKKEIELLSSLFWVWKIDVAS 1139 WFQNRRakwkrqekkk<-* F RR+ + + k + KIAA0863 1140 FFGKRRYICMKAIKNH 1155 //