hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15202356/chunk_1/iprscan-20080502-15202356.nocrc
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Query sequence: KIAA0867
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.fs Helix-loop-helix DNA-binding domain             39.8    5.8e-10   1
PF00010.16.ls Helix-loop-helix DNA-binding domain             41.8    2.2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1     369   419 ..     1    53 []    39.8  5.8e-10
PF00010.16.ls   1/1     369   419 ..     1    53 []    41.8  2.2e-09

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 369 to 419: score 39.8, E = 5.8e-10
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskK.lsKaeiLrlAv
                      r ++h  +E++RR +i+ +f+ L +l+ +   + K  s a +L+++v
    KIAA0867   369    RQMKHISAEQKRRFNIKMCFDMLNSLISN---NSKlTSHAITLQKTV 412  

                   eYIksLq<-*
                   eYI +Lq   
    KIAA0867   413 EYITKLQ    419  

PF00010.16.ls: domain 1 of 1, from 369 to 419: score 41.8, E = 2.2e-09
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskK.lsKaeiLrlAv
                      r ++h  +E++RR +i+ +f+ L +l+ +   + K  s a +L+++v
    KIAA0867   369    RQMKHISAEQKRRFNIKMCFDMLNSLISN---NSKlTSHAITLQKTV 412  

                   eYIksLq<-*
                   eYI +Lq   
    KIAA0867   413 EYITKLQ    419  

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