# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk06970mrp1.fasta.huge -Q ../query/KIAA0870.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0870, 1019 aa vs ./tmplib.23663 library 1986486 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.4549+/-0.00513; mu= 18.9399+/- 0.349 mean_var=97.3161+/-23.148, 0's: 0 Z-trim: 8 B-trim: 0 in 0/40 Lambda= 0.130012 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1091 ( 1359 res) hk04373 (1359) 254 59.3 4e-09 KIAA1766 ( 1123 res) fj16085(revised) (1123) 237 56.0 3.3e-08 KIAA0358 ( 1584 res) hh00017 (1584) 231 55.1 8.7e-08 KIAA1608 ( 872 res) fj20142 ( 872) 225 53.6 1.3e-07 KIAA1277 ( 1039 res) fj11251 (1039) 218 52.4 3.7e-07 KIAA0476 ( 1626 res) ah04654 (1626) 212 51.5 1e-06 >>KIAA1091 ( 1359 res) hk04373 (1359 aa) initn: 248 init1: 223 opt: 254 Z-score: 255.7 bits: 59.3 E(): 4e-09 Smith-Waterman score: 254; 30.058% identity (60.694% similar) in 173 aa overlap (4-166:350-512) 10 20 30 KIAA08 ADPESPILDLDLHLPLLCFRPEKVLQILTCILT : :..:. .. . . :.:.:..:: : KIAA10 LYEVPLPPPGRSLKFSGVYGPIICQRPSTNELPLFDFPVKEVFELLGVENVFQLFTCALL 320 330 340 350 360 370 40 50 60 70 80 90 KIAA08 EQRIVFFSSDWALLTLVTECFMAYLYPLQWQHPFVPILSDQMLDFVMAPTSFLMGCHLDH : .:...:. . : :.: . : ..:.:::: .:::: ..: :. ::. .::: : . KIAA10 EFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNG 380 390 400 410 420 430 100 110 120 130 140 KIAA08 FEEVSK----EADGLVLINIDHGSITYSKSTDDNVDIPDVPLLAAQTFIQRVQSLQL--- ... :: . .: ...::. : . :.:. : :.:.:. . . KIAA10 LDDRSKLELPQEANLCFVDIDNHFIELPE------DLPQFP--NKLEFVQEVSEILMAFG 440 450 460 470 480 490 150 160 170 180 190 200 KIAA08 ---HHELHAAHLLSSTDLKEGRAHRRSWQQKLNCQIQQTTLQLLVSIFRDVKNHLNYEHR . .:: .. :.. ::. :: KIAA10 IPPEGNLHCSE--SASKLKRLRASELVSDKRNGNIAGSPLHSYELLKENETIARLQALVK 500 510 520 530 540 >>KIAA1766 ( 1123 res) fj16085(revised) (1123 aa) initn: 201 init1: 176 opt: 237 Z-score: 239.3 bits: 56.0 E(): 3.3e-08 Smith-Waterman score: 249; 24.901% identity (60.079% similar) in 253 aa overlap (6-249:164-404) 10 20 30 KIAA08 ADPESPILDLDLHLPLLCFRPEKVLQILTCILTEQ :: .. : . . ..::... .:::. KIAA17 LVPAAGGSQKLFSLGAGDRQLIQTPLHDSLPITGTSVALLFQQLGIQNVLSLFCAVLTEN 140 150 160 170 180 190 40 50 60 70 80 90 KIAA08 RIVFFSSDWALLTLVTECFMAYLYPLQWQHPFVPILSDQMLDFVMAPTSFLMGCHLDHFE ...: :... :. . . . . ..::....:..::: :.:. . .:: :..: : . :. KIAA17 KVLFHSASFQRLSDACRALESLMFPLKYSYPYIPILPAQLLEVLSSPTPFIIGVH-SVFK 200 210 220 230 240 250 100 110 120 130 140 150 KIAA08 EVSKEADGLVLINIDHGSITYSKSTDDNVDIPDVPLLAAQTFIQRVQSLQLHHELHAA-H .: ... ..: :.: . . ..:. ::: :: : . :: :: .:..: : KIAA17 TDVHELLDVIIADLDGGTIKIPECIHLS-SLPE-PLLH-QT--QSALSLILHPDLEVADH 260 270 280 290 300 160 170 180 190 200 KIAA08 LLSSTDLKEGRAHRRSWQQKLNCQIQQTTLQLLVSIFRDVKNHLNY-----EHRV-FNSE . . . .: .. :. ... . :.:....:. .. :. : . :.. KIAA17 AFPPP--RTALSH----SKMLDKEVRAVFLRLFAQLFQGYRSCLQLIRIHAEPVIHFHKT 310 320 330 340 350 360 210 220 230 240 250 260 KIAA08 EFLKTRAPGDHQFYKQVLDTYMFHSFLKARLN--RRMDAFAQMDLDTQSEEDRINGMLLS :: :. ...: .::. . : .:.. : : : : .. KIAA17 AFLGQRGLVENDFLTKVLSGMAFAGFVSERGPPYRSCDLFDELVAFEVERIKVEENNPVK 370 380 390 400 410 420 270 280 290 300 310 320 KIAA08 PRRPTVEKRASRKSSHLHVTHRRMVVSMPNLQDIAMPELAPRNSSLRLTDTAGCRGSSAV KIAA17 MIKHVRELAEQLFKNENPNPHMAFQKVPRPTEGSHLRVHILPFPEINEARVQELIQENVA 430 440 450 460 470 480 >>KIAA0358 ( 1584 res) hh00017 (1584 aa) initn: 177 init1: 177 opt: 231 Z-score: 231.7 bits: 55.1 E(): 8.7e-08 Smith-Waterman score: 231; 27.059% identity (59.412% similar) in 170 aa overlap (2-165:289-455) 10 20 30 KIAA08 ADPES-PILDLDLHLPLLCFRPEKVLQILTC :: ..:. ::::: . . ::.::: KIAA03 RSPVPVSGQKRVDIEVLPQELQPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTC 260 270 280 290 300 310 40 50 60 70 80 KIAA08 ILTEQRIVFFSSDWALLTLVTECFMAYLYPLQWQHPFVPILSDQMLD---FVMAPTSFLM :: :...:. : :. :.. . :.:..:::... : .:.: : . ...::: ... KIAA03 ILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYII 320 330 340 350 360 370 90 100 110 120 130 140 KIAA08 GCHLDHF--EEVSKEADGLVLINIDHGSITYSKSTDDNVDIPDVPLLAAQTFIQRVQSLQ : . : . : : . :...: . . :. .: .: .: . . ..... KIAA03 GVPASFFLYKLDFKMPDDVWLVDLDSNRVI--APTNAEV-LPILPEPESLELKKHLKQAL 380 390 400 410 420 430 150 160 170 180 190 200 KIAA08 LHHELHAAHLLSSTDLKEGRAHRRSWQQKLNCQIQQTTLQLLVSIFRDVKNHLNYEHRVF :.. .:. ..::. KIAA03 ASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVA 440 450 460 470 480 490 >>KIAA1608 ( 872 res) fj20142 (872 aa) initn: 253 init1: 192 opt: 225 Z-score: 228.3 bits: 53.6 E(): 1.3e-07 Smith-Waterman score: 225; 30.579% identity (65.289% similar) in 121 aa overlap (24-143:82-200) 10 20 30 40 50 KIAA08 ADPESPILDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLVTEC .:.. . .: :.::... : . :: . KIAA16 YFTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHG 60 70 80 90 100 110 60 70 80 90 100 110 KIAA08 FMAYLYPLQWQHPFVPILSDQMLDFVMAPTSFLMGCHLDHFEEVSKEA-DGLVLINIDHG :.:::. ::: ..:.: ..::. :: .:.: ::. .:.: . : : .:..:.: KIAA16 SAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVD-- 120 130 140 150 160 120 130 140 150 160 170 KIAA08 SITYSKSTDDNVDIPDVPLLAAQTFIQRVQSLQLHHELHAAHLLSSTDLKEGRAHRRSWQ . : :: ..:. . . .. ...:.. KIAA16 TNTLETPFDDLQSLPNDVISSLKNRLKKVSTTTGDGVARAFLKAQAAFFGSYRNALKIEP 170 180 190 200 210 220 180 190 200 210 220 230 KIAA08 QKLNCQIQQTTLQLLVSIFRDVKNHLNYEHRVFNSEEFLKTRAPGDHQFYKQVLDTYMFH KIAA16 KGSGAILNTVKTKANPAMKTVYKFAKDHAKMGIKEVKNRLKQKDIAENGCAPTPEEQLPK 230 240 250 260 270 280 >>KIAA1277 ( 1039 res) fj11251 (1039 aa) initn: 190 init1: 137 opt: 218 Z-score: 220.4 bits: 52.4 E(): 3.7e-07 Smith-Waterman score: 235; 25.532% identity (59.574% similar) in 235 aa overlap (27-254:788-1008) 10 20 30 40 50 KIAA08 ADPESPILDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLVTECFMA ... .: :.:..:... ..:. . ..: KIAA12 IELCRPLDSRLEHVDFESLFSSLSVRHLVCVFASLLLERRVIFIADKLSILSKCCHAMVA 760 770 780 790 800 810 60 70 80 90 100 110 KIAA08 YLYPLQWQHPFVPILSDQMLDFVMAPTSFLMG---CHLDHFEEVSKEADGLVLINIDHGS .::. ::: ..:.: :.:.: .:: ::.: : ..:. : ::. .: . KIAA12 LIYPFAWQHTYIPVLPPAMVDIVCSPTPFLIGLLSSSLPLLRELPLEE---VLV-VDLVN 820 830 840 850 860 870 120 130 140 150 160 170 KIAA08 ITYSKSTDDNVDIPDVPLLAAQTFIQRVQSLQLHHELHAAHLLSSTDLKEGRAHRRSWQQ . .. ::. .: : :. .... :. ..:: . . : :: .: . KIAA12 SRFLRQMDDEDSILPRKL---QVVLEHI--LEQRNELACEQDEGPLD---GRHGPES--S 880 890 900 910 920 180 190 200 210 220 KIAA08 KLNCQIQQTTLQLLVSIFRDVKNHLN---YEHRVFNSEEFLKTRAPGDHQFYKQV-LDTY :: .... ....: : . :. :.:... : : :. . . . . .: ..: KIAA12 PLNEVVSEAFVRFFVEIVGHYSLFLTSGEREERTLQREAFRKAVSSKSLRHFLEVFMETQ 930 940 950 960 970 980 230 240 250 260 270 280 KIAA08 MFHSFLKARLNRRMDAFAQMDLDTQSEEDRINGMLLSPRRPTVEKRASRKSSHLHVTHRR ::..:.. : ::.:: . ... .: KIAA12 MFRGFIQERELRRQDAKGLFEVRAQEYLETLPSGEHSGVNKFLKGLGNKMKFLHKK 990 1000 1010 1020 1030 >>KIAA0476 ( 1626 res) ah04654 (1626 aa) initn: 216 init1: 184 opt: 212 Z-score: 212.3 bits: 51.5 E(): 1e-06 Smith-Waterman score: 259; 26.180% identity (58.369% similar) in 233 aa overlap (21-236:537-764) 10 20 30 40 50 KIAA08 ADPESPILDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLV :: .. .: .:::.... : ::: : KIAA04 PYDNLLLCQPVSSPLPLSGASFLQLLQSLGPELAITLLLAVLTEHKLLVHSLRPDLLTSV 510 520 530 540 550 560 60 70 80 90 100 110 KIAA08 TECFMAYLYPLQWQHPFVPILSDQMLDFVMAPTSFLMGCHLDHFEEVSKEADGLVLINID : ......::.:: :..:. . : . ::. :..: : ..:. . :: .. ...: KIAA04 CEALVSMIFPLHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFDLHDPPAD-VICVDLD 570 580 590 600 610 620 120 130 140 150 160 KIAA08 HGSI--TYSKSTDDNVDIPDVP---LLAAQT-FIQRVQSLQLHHELHAAHLLSSTDLKEG ... : :. . .: : :::. : . :.... : .:. . :: :. KIAA04 TNTLFQTEEKKLLSPRTLPRRPYKVLLATLTNLYQQLDQTYTGPEEEASLEFLLTDY-EA 630 640 650 660 670 680 170 180 190 200 210 KIAA08 RAHRRSWQQKLNCQIQQTTLQLLVSIFRDVKNHLNYEHR-----------VFNSEEFLKT ::. .:. ..: . :.... ... . : . .: . :::. KIAA04 VCGRRA---RLEREVQGAFLRFMACLLKGYRVFLRPLTQAPSEGARDVDNLFFLQGFLKS 690 700 710 720 730 740 220 230 240 250 260 270 KIAA08 RAPGDHQFYKQVLDTYMFHSFLKARLNRRMDAFAQMDLDTQSEEDRINGMLLSPRRPTVE : ..:..:.:.: : :: .:.. KIAA04 RERSSHKLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVEKVHPEQEKPEPTPLVEL 750 760 770 780 790 800 1019 residues in 1 query sequences 1986486 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:31 2008 done: Thu Dec 18 15:19:32 2008 Total Scan time: 0.670 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]