hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15253142/chunk_1/iprscan-20080502-15253142.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0870
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02141.11.fs DENN (AEX-3) domain                            105.3    1.3e-29   1
PF03455.9.fs dDENN domain                                    84.9    3.2e-23   1
PF03455.9.ls dDENN domain                                    86.7    6.6e-23   1
PF02141.11.ls DENN (AEX-3) domain                              0.2    2.4e-08   1
PF00400.22.fs WD domain, G-beta repeat                        27.9    6.7e-07   3
PF00400.22.ls WD domain, G-beta repeat                        31.7    2.4e-06   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02141.11.ls   1/1       1   112 [.     1   231 []     0.2  2.4e-08
PF02141.11.fs   1/1       2   112 ..   116   231 .]   105.3  1.3e-29
PF03455.9.fs   1/1     175   238 ..     1    81 []    84.9  3.2e-23
PF03455.9.ls   1/1     175   238 ..     1    81 []    86.7  6.6e-23
PF00400.22.fs   2/3     797   838 ..     1    38 []    16.3   0.0013

Alignments of top-scoring domains:
PF02141.11.ls: domain 1 of 1, from 1 to 112: score 0.2, E = 2.4e-08
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                                                                     
    KIAA0870     -    ----------------------------------------------- -    

                   srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg
                                                  +                  
    KIAA0870     1 ------------------------------AD------------------ 2    

                   agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl
                                      +++p+ d dl++++ +  +e vlq+++++L+
    KIAA0870     3 -------------------PESPILDLDLHLPLLCFRPEKVLQILTCILT 33   

                   ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc
                   E++i+f Ss+   L+ + +++ a LYPl+Wqhp++P+L +++l   d+++
    KIAA0870    34 EQRIVFFSSDWALLTLVTECFMAYLYPLQWQHPFVPILSDQML---DFVM 80   

                   APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   APt+Fl+G h   fe+v + ++   +v+ ++D +   
    KIAA0870    81 APTSFLMGCHLDHFEEVSKEAD--GLVLINIDHG    112  

PF02141.11.fs: domain 1 of 1, from 2 to 112: score 105.3, E = 1.3e-29
                   *->plplpledfdlaelFeaLGvenvlqLfaaaLlErkiLflSsklsrLs
                      ++++p+ d dl++++ +  +e vlq+++++L+E++i+f Ss+   L+
    KIAA0870     2    DPESPILDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLT 48   

                   scchAlvaLLYPleWqhpyIPvLPasLlsAEdvLcAPtPFlIGVhssffe
                    + +++ a LYPl+Wqhp++P+L +++l   d+++APt+Fl+G h   fe
    KIAA0870    49 LVTECFMAYLYPLQWQHPFVPILSDQML---DFVMAPTSFLMGCHLDHFE 95   

                   lvkdlpleidvvvVDLDtn<-*
                   +v + ++   +v+ ++D +   
    KIAA0870    96 EVSKEAD--GLVLINIDHG    112  

PF03455.9.fs: domain 1 of 1, from 175 to 238: score 84.9, E = 3.2e-23
                   *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke
                      l++q++++ L+++ +s++++ +n+L+y            e+++F+ e
    KIAA0870   175    LNCQIQQTTLQLL-VSIFRDVKNHLNY------------EHRVFNSE 208  

                   aFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   +FLk+r+++++ +F++++l+t+   mF++F+++R   
    KIAA0870   209 EFLKTRAPGDH-QFYKQVLDTY---MFHSFLKAR    238  

PF03455.9.ls: domain 1 of 1, from 175 to 238: score 86.7, E = 6.6e-23
                   *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke
                      l++q++++ L+++ +s++++ +n+L+y            e+++F+ e
    KIAA0870   175    LNCQIQQTTLQLL-VSIFRDVKNHLNY------------EHRVFNSE 208  

                   aFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   +FLk+r+++++ +F++++l+t+   mF++F+++R   
    KIAA0870   209 EFLKTRAPGDH-QFYKQVLDTY---MFHSFLKAR    238  

PF00400.22.fs: domain 2 of 3, from 797 to 838: score 16.3, E = 0.0013
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                        c + l++H s+Vt++ +    + ++ + s+S Dg + +W+   
    KIAA0870   797    MSCNkQLtAHCSSVTDLIVQDGqeAPSNVYSCSMDGMVLVWN    838  

//