hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15253142/chunk_1/iprscan-20080502-15253142.nocrc
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Query sequence: KIAA0870
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00801                                                  69.0      6e-16   1
SM00799                                                  67.8    1.3e-15   1
SM00320                                                  40.6    2.2e-07   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00799     1/1       1   112 [.     1   204 []    67.8  1.3e-15
SM00801     1/1     175   238 ..     1    84 []    69.0    6e-16
SM00320     1/3     753   793 ..     1    46 []     5.3       72
SM00320     2/3     796   838 ..     1    46 []    24.2    0.018
SM00320     3/3     977  1017 ..     1    46 []    11.1      8.7

Alignments of top-scoring domains:
SM00799: domain 1 of 1, from 1 to 112: score 67.8, E = 1.3e-15
                   *->yapkcisCilSrlpffelFrkfLnelyrllasdsssellleellisl
                                                    a                
    KIAA0870     1    ------------------------------A---------------- 1    

                   llspvPlPppggslvlsslsSyvslgppgdlvvpielqrPddselplide
                                                            d e p  d 
    KIAA0870     2 -----------------------------------------DPESPILD- 9    

                   nfdlheLfecLgvenvlqLfaslLlErrIifvSsnlstLsavieallaLL
                     dlh+++ c+++e+vlq+++++L+E+rI+f+Ss++++L+ v e++ a L
    KIAA0870    10 -LDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLVTECFMAYL 58   

                   yPFvWQhvyIPiLPasLldvLsAPtPFiiGvhssffeevkeepdeeddvv
                   yP++WQh+++PiL  ++ld+++APt F++G+h  +feev++e d+   +v
    KIAA0870    59 YPLQWQHPFVPILSDQMLDFVMAPTSFLMGCHLDHFEEVSKEADG---LV 105  

                   vVDLDtg<-*
                   ++++D g   
    KIAA0870   106 LINIDHG    112  

SM00801: domain 1 of 1, from 175 to 238: score 69.0, E = 6e-16
                   *->lndeireaaFlrffnsaqllggllYrnflrkhpitdaptwrkepgpv
                      ln++i++ + l+++  ++++++   +n+l+           +e   +
    KIAA0870   175    LNCQIQQ-TTLQLL--VSIFRD--VKNHLN-----------YE---H 202  

                   isFdkesFlksrpsselrpFlkkfletQmFsqFIeer<-*
                   ++F++e+Flk+r + + ++F+k++l+t mF  F+  r   
    KIAA0870   203 RVFNSEEFLKTRAPGD-HQFYKQVLDTYMFHSFLKAR    238  

SM00320: domain 1 of 3, from 753 to 793: score 5.3, E = 72
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      ++  ++  + +  t+   V+++   +        n++ +gs+D+ i+
    KIAA0870   753    SsWTIHQHSfkVGTA--KVNCMVMADQ-------NQVWVGSeDSVIY 790  

                   lWd<-*
                   + +   
    KIAA0870   791 IIN    793  

SM00320: domain 2 of 3, from 796 to 838: score 24.2, E = 0.018
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++ + l++H +  +Vt++ + +   +   p+ ++s+s Dg + +W
    KIAA0870   796    SmSCNKQLTAHCS--SVTDLIVQDGQEA---PSNVYSCSmDGMVLVW 837  

                   d<-*
                   +   
    KIAA0870   838 N    838  

SM00320: domain 3 of 3, from 977 to 1017: score 11.1, E = 8.7
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs...Dgtir
                       +++ ++l +H +   V++++   d       ++++sgs+++ g++ 
    KIAA0870   977    RkTVEKELVAHMD--TVRTLCSAED-------RYVLSGSgreEGKVA 1014 

                   lWd<-*
                   +W+   
    KIAA0870  1015 IWK    1017 

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